المؤلفون: Frank, Steven A., Bruggeman, Frank J.

مصطلحات موضوعية: Quantitative Biology - Populations and Evolution, Computer Science - Information Theory

URL الوصول: http://arxiv.org/abs/2010.14544

المؤلفون: Orsi, Enrico, Hernández-Sancho, Javier M., Remeijer, Maaike S., Kruis, Aleksander J., Volke, Daniel C., Claassens, Nico J., Paul, Caroline E., Bruggeman, Frank J., Weusthuis, Ruud A., Nikel, Pablo I.

المصدر: Orsi , E , Hernández-Sancho , J M , Remeijer , M S , Kruis , A J , Volke , D C , Claassens , N J , Paul , C E , Bruggeman , F J , Weusthuis , R A & Nikel , P I 2024 , ' Harnessing noncanonical redox cofactors to advance synthetic assimilation of one-carbon feedstocks ' , Current Opinion in Biotechnology , vol. 90 , 103195 , pp. 1-13 . https://doi.org/10.1016/j.copbio.2024.103195

الاتاحة: https://research.vu.nl/en/publications/6d1c774b-6e65-4d0b-9a1a-71ad6dd5f18c
https://doi.org/10.1016/j.copbio.2024.103195
https://hdl.handle.net/1871.1/6d1c774b-6e65-4d0b-9a1a-71ad6dd5f18c
http://www.scopus.com/inward/record.url?scp=85203871239&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85203871239&partnerID=8YFLogxK

المؤلفون: Berkvens, Alicia, Salinas, Luis, Remeijer, Maaike, Planqué, Robert, Teusink, Bas, Bruggeman, Frank J.

المصدر: Berkvens , A , Salinas , L , Remeijer , M , Planqué , R , Teusink , B & Bruggeman , F J 2024 , ' Understanding and computational design of genetic circuits of metabolic networks ' , Essays in Biochemistry , vol. 68 , no. 1 , pp. 41-51 . https://doi.org/10.1042/EBC20230045

مصطلحات موضوعية: Escherichia coli, gene expression and regulation, mathematical modelling, microbiology

الاتاحة: https://research.vu.nl/en/publications/3f88ef42-52dc-4429-a6e9-5c1a8d4cbca4
https://doi.org/10.1042/EBC20230045
https://hdl.handle.net/1871.1/3f88ef42-52dc-4429-a6e9-5c1a8d4cbca4
http://www.scopus.com/inward/record.url?scp=85191707530&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85191707530&partnerID=8YFLogxK

المؤلفون: Frank, Steven A, Bruggeman, Frank J

المصدر: Entropy (Basel, Switzerland). 22(12)

مصطلحات موضوعية: Price equation, evolutionary dynamics, information theory, interdisciplinary unification, natural selection, thermodynamics, q-bio.PE, cs.IT, math.IT, Fluids & Plasmas, Mathematical Sciences, Physical Sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6tm165q9

المؤلفون: Teusink, Bas, Planqué, Robert, Bruggeman, Frank J.

المصدر: Nature Metabolism ; volume 7, issue 1, page 8-10 ; ISSN 2522-5812

الاتاحة: https://doi.org/10.1038/s42255-024-01182-w
https://www.nature.com/articles/s42255-024-01182-w.pdf
https://www.nature.com/articles/s42255-024-01182-w

المؤلفون: Gerber, Alan, van Otterdijk, Sander, Bruggeman, Frank J., Tutucci, Evelina

المصدر: Gerber , A , van Otterdijk , S , Bruggeman , F J & Tutucci , E 2023 , ' Understanding spatiotemporal coupling of gene expression using single molecule RNA imaging technologies ' , Transcription , pp. 1-22 . https://doi.org/10.1080/21541264.2023.2199669

Relation: https://research.vumc.nl/en/publications/df753f63-c2cf-4d9e-beff-41e81e12d4dd

الاتاحة: https://research.vumc.nl/en/publications/df753f63-c2cf-4d9e-beff-41e81e12d4dd
https://doi.org/10.1080/21541264.2023.2199669
http://www.scopus.com/inward/record.url?scp=85152967351&partnerID=8YFLogxK

المؤلفون: Bruggeman, Frank J., Remeijer, Maaike, Droste, Maarten, Salinas, Luis, Wortel, Meike, Planqué, Robert, Sauro, Herbert M., Teusink, Bas, Westerhoff, Hans V.

المصدر: Bruggeman , F J , Remeijer , M , Droste , M , Salinas , L , Wortel , M , Planqué , R , Sauro , H M , Teusink , B & Westerhoff , H V 2023 , ' Whole-cell metabolic control analysis ' , BioSystems , vol. 234 , 105067 , pp. 1-20 . https://doi.org/10.1016/j.biosystems.2023.105067

مصطلحات موضوعية: Elementary flux modes, Enzyme kinetics, Metabolic control analysis, Whole cell models

الاتاحة: https://research.vu.nl/en/publications/59d3de11-3403-4197-994f-96c27aa27060
https://doi.org/10.1016/j.biosystems.2023.105067
https://hdl.handle.net/1871.1/59d3de11-3403-4197-994f-96c27aa27060
http://www.scopus.com/inward/record.url?scp=85175292558&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85175292558&partnerID=8YFLogxK

المؤلفون: Bruggeman, Frank J., Teusink, Bas, Steuer, Ralf

المصدر: Bruggeman , F J , Teusink , B & Steuer , R 2023 , ' Trade-offs between the instantaneous growth rate and long-term fitness : Consequences for microbial physiology and predictive computational models ' , BioEssays , vol. 45 , no. 10 , 2300015 , pp. 1-20 . https://doi.org/10.1002/bies.202300015

مصطلحات موضوعية: E. coli, evolution, flux balance analysis, metabolism, microbial growth strategies, microbial physiology, microbial systems biology, resource allocation, S. cerevisiae

الاتاحة: https://research.vu.nl/en/publications/3ffdf67d-3698-4522-9478-1cb451149c21
https://doi.org/10.1002/bies.202300015
https://hdl.handle.net/1871.1/3ffdf67d-3698-4522-9478-1cb451149c21
http://www.scopus.com/inward/record.url?scp=85167408860&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85167408860&partnerID=8YFLogxK

المؤلفون: de Groot, Daan H., Tjalma, Age J., Bruggeman, Frank J., van Nimwegen, Erik

المصدر: de Groot , D H , Tjalma , A J , Bruggeman , F J & van Nimwegen , E 2023 , ' Effective bet-hedging through growth rate dependent stability ' , Proceedings of the National Academy of Sciences of the United States of America , vol. 120 , no. 8 , e2211091120 , pp. 1-10 . https://doi.org/10.1073/pnas.2211091120

مصطلحات موضوعية: bet-hedging, growth rate dependent stability, microbial adaptation, microbial population dynamics, phenotypic heterogeneity

الاتاحة: https://research.vu.nl/en/publications/98fcd664-7db2-4fbd-8693-7c124ed51701
https://doi.org/10.1073/pnas.2211091120
https://hdl.handle.net/1871.1/98fcd664-7db2-4fbd-8693-7c124ed51701
http://www.scopus.com/inward/record.url?scp=85147897749&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85147897749&partnerID=8YFLogxK

المؤلفون: El-Semman, Ibrahim, 1977, Rodriguez Prado, Angelica, Grigaitis, Pranas, Garcia, Manuel, 1973, Harman, Victoria, Holman, Stephen W., van Heerden, Johan, Bruggeman, Frank J., Bisschops, Mark, 1985, Sonnenschein, N., Hubbard, Simon, Beynon, Rob, Daran-Lapujade, P., Nielsen, Jens B, 1962, Teusink, B.

المصدر: Nature Communications. 13(1)

وصف الملف: electronic

URL الوصول: https://research.chalmers.se/publication/528719
https://research.chalmers.se/publication/528719/file/528719_Fulltext.pdf

المؤلفون: Berkvens, Alicia, Chauhan, Priyanka, Bruggeman, Frank J.

المصدر: Berkvens , A , Chauhan , P & Bruggeman , F J 2022 , ' Integrative biology of persister cell formation: molecular circuitry, phenotypic diversification and fitness effects ' , Journal of the Royal Society Interface , vol. 19 , no. 194 , 20220129 , pp. 1-12 . https://doi.org/10.1098/rsif.2022.0129

مصطلحات موضوعية: mathematical models, microbial fitness and bet hedging, persister cell microbiology, systems biology, /dk/atira/pure/sustainabledevelopmentgoals/life_on_land, name=SDG 15 - Life on Land

الاتاحة: https://research.vu.nl/en/publications/5d5232e9-c78e-429c-8747-10cc274b087b
https://doi.org/10.1098/rsif.2022.0129
https://hdl.handle.net/1871.1/5d5232e9-c78e-429c-8747-10cc274b087b
http://www.scopus.com/inward/record.url?scp=85137825279&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85137825279&partnerID=8YFLogxK

المؤلفون: Chavez-Abiega, Sergei, Gönloh, Max L.B., Gadella, Theodorus W.J., Bruggeman, Frank J., Goedhart, Joachim

المصدر: Chavez-Abiega , S , Gönloh , M L B , Gadella , T W J , Bruggeman , F J & Goedhart , J 2022 , ' Single-cell imaging of ERK and Akt activation dynamics and heterogeneity induced by G-protein-coupled receptors ' , Journal of cell science , vol. 135 , no. 6 , jcs259685 , pp. 1-13 . https://doi.org/10.1242/jcs.259685

مصطلحات موضوعية: Biosensor, Fluorescence imaging, GPCR, Image analysis, Kinase, Signaling

الاتاحة: https://research.vu.nl/en/publications/985f5782-d73c-48bc-9d17-32879f6c3ec4
https://doi.org/10.1242/jcs.259685
https://hdl.handle.net/1871.1/985f5782-d73c-48bc-9d17-32879f6c3ec4
http://www.scopus.com/inward/record.url?scp=85127974225&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85127974225&partnerID=8YFLogxK

المؤلفون: Rabbers, Iraes, Gottstein, Willi, Feist, Adam M., Teusink, Bas, Bruggeman, Frank J., Bachmann, Herwig

المصدر: Rabbers , I , Gottstein , W , Feist , A M , Teusink , B , Bruggeman , F J & Bachmann , H 2022 , ' Selection for Cell Yield Does Not Reduce Overflow Metabolism in Escherichia coli ' , Molecular biology and evolution , vol. 39 , no. 1 , msab345 , pp. 1-10 . https://doi.org/10.1093/molbev/msab345

مصطلحات موضوعية: cell size, emulsion culturing, experimental evolution, metabolic strategy, overflow metabolism, r/k selection, yield

الاتاحة: https://research.vu.nl/en/publications/58fd03b9-76e2-4ff9-860c-b70fc5df23c0
https://doi.org/10.1093/molbev/msab345
https://hdl.handle.net/1871.1/58fd03b9-76e2-4ff9-860c-b70fc5df23c0
http://www.scopus.com/inward/record.url?scp=85123879071&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85123879071&partnerID=8YFLogxK

المؤلفون: Rabbers, Iraes, Bruggeman, Frank J.

المصدر: Rabbers , I & Bruggeman , F J 2022 , ' Escherichia coli robustly expresses ATP synthase at growth rate-maximizing concentrations ' , FEBS Journal , vol. 289 , no. 16 , pp. 4925-4934 . https://doi.org/10.1111/febs.16401

مصطلحات موضوعية: ATP synthase, Escherichia coli, fitness maximization, maximal growth rate, protein expression

Relation: https://research.vu.nl/en/publications/e3f7d725-4e34-4fe7-b49e-5ac281634220

الاتاحة: https://research.vu.nl/en/publications/e3f7d725-4e34-4fe7-b49e-5ac281634220
https://doi.org/10.1111/febs.16401
https://hdl.handle.net/1871.1/e3f7d725-4e34-4fe7-b49e-5ac281634220
http://www.scopus.com/inward/record.url?scp=85126354184&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85126354184&partnerID=8YFLogxK

المؤلفون: Botman, Dennis, O'Toole, Tom G., Goedhart, Joachim, Bruggeman, Frank J., van Heerden, Johan H., Teusink, Bas

المصدر: Botman , D , O'Toole , T G , Goedhart , J , Bruggeman , F J , van Heerden , J H & Teusink , B 2021 , ' A yeast FRET biosensor enlightens cAMP signaling ' , Molecular Biology of the Cell , vol. 32 , no. 13 , pp. 1229-1240 . https://doi.org/10.1091/MBC.E20-05-0319

الاتاحة: https://research.vumc.nl/en/publications/e6a4fc30-8911-400e-a38f-cc5b84c85851
https://doi.org/10.1091/MBC.E20-05-0319
http://www.scopus.com/inward/record.url?scp=85108386575&partnerID=8YFLogxK

المؤلفون: Clement, Tom J., Baalhuis, Erik B., Teusink, Bas, Bruggeman, Frank J., Planqué, Robert, de Groot, Daan H.

المصدر: Clement , T J , Baalhuis , E B , Teusink , B , Bruggeman , F J , Planqué , R & de Groot , D H 2021 , ' Unlocking Elementary Conversion Modes : ecmtool Unveils All Capabilities of Metabolic Networks ' , Patterns , vol. 2 , no. 1 , 100177 . https://doi.org/10.1016/j.patter.2020.100177

مصطلحات موضوعية: DSML 2: Proof-of-concept: Data science output has been formulated, implemented, and tested for one domain/problem, elementary conversion modes, elementary mode analysis, genome-scale analysis, macrochemical equations, metabolic characterization, stoichiometric network analysis, unculturable organisms, /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being, name=SDG 3 - Good Health and Well-being

الاتاحة: https://research.vu.nl/en/publications/e0fcc6e6-6cbd-4c5e-848d-f19fde9ac699
https://doi.org/10.1016/j.patter.2020.100177
https://hdl.handle.net/1871.1/e0fcc6e6-6cbd-4c5e-848d-f19fde9ac699
http://www.scopus.com/inward/record.url?scp=85099242498&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85099242498&partnerID=8YFLogxK

المؤلفون: Slutsky, Inna, Schratt, Gerhard, Stan, Guy-Bart, Nelson, Sacha, Bruggeman, Frank J.

المصدر: Cell Systems ; volume 12, issue 12, page 1124-1126 ; ISSN 2405-4712

الاتاحة: http://dx.doi.org/10.1016/j.cels.2021.11.002
https://api.elsevier.com/content/article/PII:S240547122100452X?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S240547122100452X?httpAccept=text/plain

المؤلفون: van Heerden, Johan H, Berkvens, Alicia, de Groot, Daan H, Bruggeman, Frank J

الاتاحة: http://dx.doi.org/10.7554/elife.99996.1
https://elifesciences.org/reviewed-preprints/99996v1/pdf

المؤلفون: Kholodenko, Boris N., Kiyatkin, Anatoly, Bruggeman, Frank J., Sontag, Eduardo, Westerhoff, Hans V., Hoek, Jan B.

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2002 Oct 01. 99(20), 12841-12846.

URL الوصول: https://www.jstor.org/stable/3073310

المؤلفون: Nordholt, Niclas, van Heerden, Johan H., Bruggeman, Frank J.

المصدر: Nordholt , N , van Heerden , J H & Bruggeman , F J 2020 , ' Biphasic Cell-Size and Growth-Rate Homeostasis by Single Bacillus subtilis Cells ' , Current Biology , vol. 30 , no. 12 , pp. 2238-2247.e5 . https://doi.org/10.1016/j.cub.2020.04.030

مصطلحات موضوعية: Bacillus subtilis, bacterial cell cycle, biphasic growth, growth-rate homeostasis, single cell microbiology, size homeostasis

الاتاحة: https://research.vu.nl/en/publications/fedcb4ff-ec00-4f1b-9912-62ebb37a28ef
https://doi.org/10.1016/j.cub.2020.04.030
https://hdl.handle.net/1871.1/fedcb4ff-ec00-4f1b-9912-62ebb37a28ef
http://www.scopus.com/inward/record.url?scp=85085352342&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85085352342&partnerID=8YFLogxK