المؤلفون: Brian D. Ondov, Gabriel J. Starrett, Anna Sappington, Aleksandra Kostic, Sergey Koren, Christopher B. Buck, Adam M. Phillippy

المصدر: Genome Biology, Vol 20, Iss 1, Pp 1-13 (2019)

مصطلحات موضوعية: MinHash, Metagenomics, Sequencing, SRA, Viral Discovery, Polyomavirus, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-019-1841-x; https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/71114a92c58f48dcb8444e3159132ef3

المؤلفون: Jacquelyn S. Meisel, Daniel J. Nasko, Brian Brubach, Victoria Cepeda-Espinoza, Jessica Chopyk, Héctor Corrada-Bravo, Marcus Fedarko, Jay Ghurye, Kiran Javkar, Nathan D. Olson, Nidhi Shah, Sarah M. Allard, Adam L. Bazinet, Nicholas H. Bergman, Alexis Brown, J. Gregory Caporaso, Sean Conlan, Jocelyne DiRuggiero, Samuel P. Forry, Nur A. Hasan, Jason Kralj, Paul M. Luethy, Donald K. Milton, Brian D. Ondov, Sarah Preheim, Shashikala Ratnayake, Stephanie M. Rogers, M. J. Rosovitz, Eric G. Sakowski, Nils Oliver Schliebs, Daniel D. Sommer, Krista L. Ternus, Gherman Uritskiy, Sean X. Zhang, Mihai Pop, Todd J. Treangen

المصدر: Microbiome, Vol 6, Iss 1, Pp 1-10 (2018)

مصطلحات موضوعية: Microbiome, Metagenomics, Bioinformatics, Biodefense, Biothreats, Pathogen detection, Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-018-0582-5; https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/66ee37ad2f6c4a809bc6dd46faa314ac

المؤلفون: Adam L. Bazinet, Brian D. Ondov, Daniel D. Sommer, Shashikala Ratnayake

المصدر: PeerJ, Vol 6, p e4892 (2018)

مصطلحات موضوعية: BLAST, Metagenomics, Sequence classification, Taxonomic assignment, Bioforensics, Validation, Medicine, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://peerj.com/articles/4892.pdf; https://peerj.com/articles/4892/; https://doaj.org/toc/2167-8359

URL الوصول: https://doaj.org/article/7042156e23a7450aadebfade42142cec

المؤلفون: Brian D. Ondov, Niklas Elmqvist, Fumeng Yang, Matthew Kay, Steven Franconeri

المصدر: IEEE Transactions on Visualization and Computer Graphics. 27:1073-1083

مصطلحات موضوعية: business.industry, Bar chart, Computer science, Visual comparison, Linear model, 020207 software engineering, 02 engineering and technology, Machine learning, computer.software_genre, Computer Graphics and Computer-Aided Design, law.invention, Visualization, Data visualization, law, Signal Processing, 0202 electrical engineering, electronic engineering, information engineering, Computer Vision and Pattern Recognition, Artificial intelligence, business, Set (psychology), Proxy (statistics), computer, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f41cd18787ead07ba6239cb617b34a38
https://doi.org/10.1109/tvcg.2020.3030429

المؤلفون: Brian D. Ondov, Nicole Jardine, Niklas Elmqvist, Steven Franconeri

المصدر: IEEE Transactions on Visualization and Computer Graphics. 25:861-871

مصطلحات موضوعية: Visual perception, Computer science, business.industry, media_common.quotation_subject, Visual comparison, 020207 software engineering, 02 engineering and technology, Computer Graphics and Computer-Aided Design, Visualization, Data visualization, Human–computer interaction, Perception, Signal Processing, 0202 electrical engineering, electronic engineering, information engineering, Task analysis, Perceptual psychology, Computer Vision and Pattern Recognition, business, Software, Multiple, media_common

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a862d1fb8daaabc9ac5e4ce638e85998
https://doi.org/10.1109/tvcg.2018.2864884

المؤلفون: Karla D Passalacqua, Anjana Varadarajan, Charlotte Weist, Brian D Ondov, Benjamin Byrd, Timothy D Read, Nicholas H Bergman

المصدر: PLoS ONE, Vol 7, Iss 8, p e43350 (2012)

مصطلحات موضوعية: Medicine, Science

Relation: http://europepmc.org/articles/PMC3425587?pdf=render; https://doaj.org/toc/1932-6203; https://doaj.org/article/e1092fb8fd61477d8928a73f28a220cc

الاتاحة: https://doi.org/10.1371/journal.pone.0043350
https://doaj.org/article/e1092fb8fd61477d8928a73f28a220cc

المؤلفون: Karla D. Passalacqua, Anjana Varadarajan, Brian D. Ondov, David T. Okou, Michael E. Zwick, Nicholas H. Bergman

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://genetics.emory.edu/labs/docs/labdocs/zwick/Journal_of_Bacteriology_2009_Passalacqua.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.334.3932; http://genetics.emory.edu/labs/docs/labdocs/zwick/Journal_of_Bacteriology_2009_Passalacqua.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.334.3932
http://genetics.emory.edu/labs/docs/labdocs/zwick/Journal_of_Bacteriology_2009_Passalacqua.pdf

المؤلفون: Brian D. Ondov, Steven Franconeri, Niklas Elmqvist, Nicole Jardine

المصدر: IEEE transactions on visualization and computer graphics. 26(1)

مصطلحات موضوعية: Matching (statistics), Visual perception, Process (engineering), Bar chart, Computer science, 02 engineering and technology, Machine learning, computer.software_genre, Models, Biological, law.invention, Chart, law, Task Performance and Analysis, 0202 electrical engineering, electronic engineering, information engineering, Computer Graphics, Humans, Set (psychology), business.industry, Visual comparison, 020207 software engineering, Computer Graphics and Computer-Aided Design, Signal Processing, Human visual system model, Visual Perception, Crowdsourcing, Computer Vision and Pattern Recognition, Artificial intelligence, business, computer, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f3f1369ca1f958b5e692fee7e270efe
https://pubmed.ncbi.nlm.nih.gov/31443016

المؤلفون: Gabriel J. Starrett, Sergey Koren, Adam M. Phillippy, Christopher B. Buck, Aleksandra Kostic, Brian D. Ondov, Anna Sappington

المصدر: Genome Biology
Genome Biology, Vol 20, Iss 1, Pp 1-13 (2019)

مصطلحات موضوعية: lcsh:QH426-470, Proteome, High throughput sequence, Computer science, Method, MinHash, Computational biology, Biology, Genome, 03 medical and health sciences, RefSeq, Sequencing, Humans, Viral Discovery, lcsh:QH301-705.5, 030304 developmental biology, 0303 health sciences, Containment (computer programming), 030306 microbiology, DNA Contamination, Human genetics, High-Throughput Screening Assays, lcsh:Genetics, lcsh:Biology (General), Metagenomics, Polyomavirus, SRA, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c348e0d85d2924190f218ccb0b73ad13
https://doi.org/10.1101/557314

المؤلفون: Gherman Uritskiy, Alexis Brown, Eric G. Sakowski, Brian Brubach, Todd J. Treangen, Marcus W. Fedarko, Kiran Javkar, Mihai Pop, Shashikala Ratnayake, Nathan D. Olson, Samuel P. Forry, Paul M. Luethy, Jay Ghurye, Hector Corrada-Bravo, J. Gregory Caporaso, Jacquelyn S. Meisel, Donald K. Milton, Sarah P. Preheim, Daniel J. Nasko, Adam L. Bazinet, Sean X. Zhang, Nicholas H. Bergman, Jason G. Kralj, Nur A. Hasan, Nils Oliver Schliebs, Victoria Cepeda-Espinoza, Sarah M. Allard, Jessica Chopyk, Stephanie M. Rogers, M. J. Rosovitz, Daniel D. Sommer, Nidhi Shah, Brian D. Ondov, Jocelyne DiRuggiero, Sean Conlan, Krista Ternus

المصدر: Microbiome
Microbiome, Vol 6, Iss 1, Pp 1-10 (2018)

مصطلحات موضوعية: 0301 basic medicine, Microbiology (medical), Pathogen detection, Bioinformatics, Best practice, Biology, Meeting Report, Microbiology, lcsh:Microbial ecology, 03 medical and health sciences, Biodefense, Microbiome, business.industry, Biothreats, Longitudinal analysis, Usability, Data sharing, 030104 developmental biology, Infectious disease (medical specialty), Metagenomics, lcsh:QR100-130, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d7257db01caac1903089178ff1801167
http://europepmc.org/articles/PMC6219074

المؤلفون: Travis H Wyman, Eric Walker, Melissa Leggett-Embrey, Peifang Sun, M. J. Rosovitz, James P. Burans, Brian D. Ondov, Loni Wronka-Edwards, Sherry S Bohn, Katherine Schneider, Tadeusz J. Kochel

المصدر: Viruses
Volume 7
Issue 11
Pages 5875-5888
Viruses; Volume 7; Issue 11; Pages: 5875-5888
Viruses, Vol 7, Iss 11, Pp 5875-5888 (2015)

مصطلحات موضوعية: safety, viruses, lcsh:QR1-502, virus, Biology, Trizol LS, Antiviral Agents, lcsh:Microbiology, Virus, Article, Cell Line, Biosafety, biocontainment, Antigen, Virology, Biosafety level, antibody, Animals, Humans, RNA Viruses, inactivation, Antigens, Viral, Microbial Viability, sterility, Ficusin, RNA, biosafety, sequencing, reverse transcription, Reverse transcriptase, BSL-4, BSL-3, Reverse transcription polymerase chain reaction, Infectious Diseases, PCR, psoralen, IFA, Nucleic acid, RNA, Viral, Virus Inactivation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::901d37727395fc0342cd91213f87bcbf
http://europepmc.org/articles/PMC4664985

المؤلفون: Adam L. Bazinet, Shashikala Ratnayake, Daniel D. Sommer, Brian D. Ondov

المصدر: PeerJ
PeerJ, Vol 6, p e4892 (2018)

مصطلحات موضوعية: 0301 basic medicine, Speedup, Bioinformatics, Computer science, Sample (material), 030106 microbiology, lcsh:Medicine, Sequence classification, Biology, computer.software_genre, Microbiology, General Biochemistry, Genetics and Molecular Biology, Task (project management), 03 medical and health sciences, Software, Taxonomic assignment, Bioforensics, Validation, BLAST, TRACE (psycholinguistics), Sequence (medicine), business.industry, General Neuroscience, lcsh:R, Genomics, General Medicine, 030104 developmental biology, Metagenomics, Data mining, General Agricultural and Biological Sciences, business, Heuristics, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::397151a9b3003ee78d55f56e00462980
https://doi.org/10.1101/181636

المؤلفون: Brian D. Ondov, Todd J. Treangen, Nicholas H. Bergman, Adam B. Mallonee, Sergey Koren, Páll Melsted, Adam M. Phillippy

المصدر: Genome Biology

مصطلحات موضوعية: 0301 basic medicine, Nanopore, 030106 microbiology, Hash function, Computational biology, MinHash, Biology, computer.software_genre, Genome, Evolution, Molecular, 03 medical and health sciences, RefSeq, Cluster Analysis, Sequencing, Cluster analysis, Phylogeny, Sequence clustering, Alignment, Comparative genomics, Genetics, Genomics, 030104 developmental biology, Metagenomics, Mutation (genetic algorithm), Metagenome, Genomic distance, Pairwise comparison, Data mining, Nanopore sequencing, Databases, Nucleic Acid, computer, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::534f4365035eb26abf3b3aec6d9e573d
https://pubmed.ncbi.nlm.nih.gov/27323842

المؤلفون: Brian D Ondov, Nicholas H Bergman, Adam M Phillippy

المصدر: Encyclopedia of Metagenomics ISBN: 9781461464181

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e0f93cbb722f9fd9930ed290d15d8e6d
https://doi.org/10.1007/978-1-4899-7478-5_802

المؤلفون: Todd J. Treangen, Rosslyn Maybank, Adam M. Phillippy, Sana Enke, Nicholas H. Bergman, Sergey Koren, Mary Beth Friss, Lynn F. Diviak, Brian D. Ondov, M. J. Rosovitz, David K. R. Karaolis

المصدر: Genome Announcements

مصطلحات موضوعية: Whole genome sequencing, Susceptibility testing, Strain (chemistry), medicine.drug_class, Antibiotics, Chromosome, Biology, medicine.disease_cause, Microbiology, Plasmid, Staphylococcus aureus, Genetics, medicine, Prokaryotes, Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1fe8232a51739aed9ae5542e3c178ade
http://europepmc.org/articles/PMC4223452

المؤلفون: Adam M. Phillippy, Todd J. Treangen, Sergey Koren, Brian D. Ondov

المصدر: Genome Biology

مصطلحات موضوعية: Genetics, Bacteria, Phylogenetic tree, Sequence analysis, Suite, Sequence alignment, Sequence Analysis, DNA, Computational biology, Biology, Polymorphism, Single Nucleotide, Genome, Visualization, Phylogenetics, Sequence Alignment, Algorithms, Genome, Bacterial, Phylogeny, Software, Alignment-free sequence analysis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c58db512227d969ff261f5cbbbf98341
https://doi.org/10.1186/s13059-014-0524-x

المؤلفون: Todd J. Treangen, Adam M. Phillippy, Brian D. Ondov, Sergey Koren

مصطلحات موضوعية: Microbial Genomes, Phylogenetic tree, Computer science, Suite, Genome alignment, Computational biology, Genome, Visualization

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16135943dc0e323c272bba8925f41578
https://doi.org/10.1101/007351

المؤلفون: Arthur M. Friedlander, James P. Burans, Robin Harrington, Todd J. Treangen, Diana Radune, David K. R. Karaolis, M. J. Rosovitz, Nicholas H. Bergman, Joy Klubnik, Mary Beth Friss, Jonathan Hnath, Lynn F. Diviak, Stephen R. Cendrowski, Brian D. Ondov, Thomas E. Blank, Adam M. Phillippy

المصدر: Genome Announcements

مصطلحات موضوعية: Whole genome sequencing, Genetics, biology, Strain (biology), Virulence, biology.organism_classification, ENCODE, Genome, Bacillus anthracis, Vaccine strain, Plasmid, Prokaryotes, Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::492e9808523ae092f467b9bf62477aec
https://doi.org/10.1128/genomea.00067-12

المؤلفون: Brian D. Ondov, Bo Liu, Todd J. Treangen, Irina Astrovskaya, Daniel D. Sommer, Aaron E. Darling, Sergey Koren, Adam M. Phillippy, Mihai Pop

المصدر: Genome Biology
Treangen, Todd J; Koren, Sergey; Sommer, Daniel D; Liu, Bo; Astrovskaya, Irina; Ondov, Brian; et al.(2013). MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome Biology, 14(1), R2. doi: http://dx.doi.org/10.1186/gb-2013-14-1-r2. Retrieved from: http://www.escholarship.org/uc/item/006986kd

مصطلحات موضوعية: Human Microbiome Project, Tongue Dorsum, Bioinformatics, Tongue dorsum, Assembly Tool, Biology, computer.software_genre, Contig Mapping, 03 medical and health sciences, Software, Mock Community, 030304 developmental biology, Genetics, 0303 health sciences, 030306 microbiology, business.industry, Sequence Analysis, DNA, Modular design, Pipeline (software), Open source, Fully automated, Metagenomic Dataset, Metagenomics, Data mining, business, computer

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bd06ab69324a640d80502bd691e0d5c9

المؤلفون: Adam M. Phillippy, Brian D. Ondov, Nicholas H. Bergman

المصدر: BMC Bioinformatics
BMC Bioinformatics, Vol 12, Iss 1, p 385 (2011)

مصطلحات موضوعية: Web server, Biology, lcsh:Computer applications to medicine. Medical informatics, JavaScript, computer.software_genre, Biochemistry, Rendering (computer graphics), Software, Structural Biology, Humans, Zoom, lcsh:QH301-705.5, Molecular Biology, computer.programming_language, Internet, Information retrieval, HTML5, business.industry, Applied Mathematics, Computational Biology, Data science, Computer Science Applications, Visualization, Gastrointestinal Tract, lcsh:Biology (General), lcsh:R858-859.7, The Internet, Metagenomics, business, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c72ddfcf7645fc0feb7414943c6fb93
https://doi.org/10.1186/1471-2105-12-385