المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/journal_contribution/S1_File_-/16753644

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s013

المؤلفون: Kayla M. Williamson (6508007), Brandie D. Wagner (7249904), Charles E. Robertson (138101), Mark J. Stevens (138084), Marci K. Sontag (8662200), Peter M. Mourani (6679538), J. Kirk Harris (10642909)

مصطلحات موضوعية: Biophysics, Microbiology, Cell Biology, Molecular Biology, Ecology, Science Policy, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, 16S rRNA gene, Microbiome, Amplicon, Mechanical ventilation

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Modified_PCR_protocol_to_increase_sensitivity_for_determination_of_bacterial_community_composition/14411563

الاتاحة: https://doi.org/10.6084/m9.figshare.14411563.v1

المؤلفون: Janet C. Siebert (10171697), Martine Saint-Cyr (10171700), Sarah J. Borengasser (10171703), Brandie D. Wagner (7249904), Catherine A. Lozupone (6555479), Carsten Görg (5542001)

مصطلحات موضوعية: Statistics, Multi-omic, Predictive model, Microbiome, Metabolome, Metagenome, IBD

Relation: https://figshare.com/articles/journal_contribution/Additional_file_3_of_CANTARE_finding_and_visualizing_network-based_multi-omic_predictive_models/14067989

الاتاحة: https://doi.org/10.6084/m9.figshare.14067989.v1

المؤلفون: Janet C. Siebert (10171697), Martine Saint-Cyr (10171700), Sarah J. Borengasser (10171703), Brandie D. Wagner (7249904), Catherine A. Lozupone (6555479), Carsten Görg (5542001)

مصطلحات موضوعية: Statistics, Multi-omic, Predictive model, Microbiome, Metabolome, Metagenome, IBD

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_CANTARE_finding_and_visualizing_network-based_multi-omic_predictive_models/14067986

الاتاحة: https://doi.org/10.6084/m9.figshare.14067986.v1

المؤلفون: David T. J. Broderick (11871167), David W. Waite (9213707), Robyn L. Marsh (11871170), Carlos A. Camargo (8782952), Paul Cardenas (368097), Anne B. Chang (6957173), William O. C. Cookson (7512737), Leah Cuthbertson (4720953), Wenkui Dai (167126), Mark L. Everard (11871173), Alain Gervaix (104954), J. Kirk Harris (138076), Kohei Hasegawa (3467948), Lucas R. Hoffman (8339448), Soo-Jong Hong (212914), Laurence Josset (240542), Matthew S. Kelly (11871176), Bong-Soo Kim (2187760), Yong Kong (224694), Shuai C. Li (11871179), Jonathan M. Mansbach (4347571), Asuncion Mejias (173484), George A. O’Toole (818759), Laura Paalanen (11871182), Marcos Pérez-Losada (159353), Melinda M. Pettigrew (11871185), Maxime Pichon (11871188), Octavio Ramilo (173513), Lasse Ruokolainen (281200), Olga Sakwinska (387792), Patrick C. Seed (11871191), Christopher J. van der Gast (8656728), Brandie D. Wagner (7249904), Hana Yi (490208), Edith T. Zemanick (11871194), Yuejie Zheng (428509), Naveen Pillarisetti (11871197), Michael W. Taylor (9213713)

مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, microbiota (16S), respiratory tract, respiratory infection, paediatrics, meta-analysis, individual participant data (IPD) meta-analysis

Relation: https://figshare.com/articles/dataset/Table_1_Bacterial_Signatures_of_Paediatric_Respiratory_Disease_An_Individual_Participant_Data_Meta-Analysis_DOCX/17426930

الاتاحة: https://doi.org/10.3389/fmicb.2021.711134.s001

المؤلفون: David T. J. Broderick (11871167), David W. Waite (9213707), Robyn L. Marsh (11871170), Carlos A. Camargo (8782952), Paul Cardenas (368097), Anne B. Chang (6957173), William O. C. Cookson (7512737), Leah Cuthbertson (4720953), Wenkui Dai (167126), Mark L. Everard (11871173), Alain Gervaix (104954), J. Kirk Harris (138076), Kohei Hasegawa (3467948), Lucas R. Hoffman (8339448), Soo-Jong Hong (212914), Laurence Josset (240542), Matthew S. Kelly (11871176), Bong-Soo Kim (2187760), Yong Kong (224694), Shuai C. Li (11871179), Jonathan M. Mansbach (4347571), Asuncion Mejias (173484), George A. O’Toole (818759), Laura Paalanen (11871182), Marcos Pérez-Losada (159353), Melinda M. Pettigrew (11871185), Maxime Pichon (11871188), Octavio Ramilo (173513), Lasse Ruokolainen (281200), Olga Sakwinska (387792), Patrick C. Seed (11871191), Christopher J. van der Gast (8656728), Brandie D. Wagner (7249904), Hana Yi (490208), Edith T. Zemanick (11871194), Yuejie Zheng (428509), Naveen Pillarisetti (11871197), Michael W. Taylor (9213713)

مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, microbiota (16S), respiratory tract, respiratory infection, paediatrics, meta-analysis, individual participant data (IPD) meta-analysis

Relation: https://figshare.com/articles/dataset/Table_2_Bacterial_Signatures_of_Paediatric_Respiratory_Disease_An_Individual_Participant_Data_Meta-Analysis_XLSX/17426936

الاتاحة: https://doi.org/10.3389/fmicb.2021.711134.s002

المؤلفون: David T. J. Broderick (11871167), David W. Waite (9213707), Robyn L. Marsh (11871170), Carlos A. Camargo (8782952), Paul Cardenas (368097), Anne B. Chang (6957173), William O. C. Cookson (7512737), Leah Cuthbertson (4720953), Wenkui Dai (167126), Mark L. Everard (11871173), Alain Gervaix (104954), J. Kirk Harris (138076), Kohei Hasegawa (3467948), Lucas R. Hoffman (8339448), Soo-Jong Hong (212914), Laurence Josset (240542), Matthew S. Kelly (11871176), Bong-Soo Kim (2187760), Yong Kong (224694), Shuai C. Li (11871179), Jonathan M. Mansbach (4347571), Asuncion Mejias (173484), George A. O’Toole (818759), Laura Paalanen (11871182), Marcos Pérez-Losada (159353), Melinda M. Pettigrew (11871185), Maxime Pichon (11871188), Octavio Ramilo (173513), Lasse Ruokolainen (281200), Olga Sakwinska (387792), Patrick C. Seed (11871191), Christopher J. van der Gast (8656728), Brandie D. Wagner (7249904), Hana Yi (490208), Edith T. Zemanick (11871194), Yuejie Zheng (428509), Naveen Pillarisetti (11871197), Michael W. Taylor (9213713)

مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, microbiota (16S), respiratory tract, respiratory infection, paediatrics, meta-analysis, individual participant data (IPD) meta-analysis

Relation: https://figshare.com/articles/dataset/Table_4_Bacterial_Signatures_of_Paediatric_Respiratory_Disease_An_Individual_Participant_Data_Meta-Analysis_XLSX/17426945

الاتاحة: https://doi.org/10.3389/fmicb.2021.711134.s004

المؤلفون: David T. J. Broderick (11871167), David W. Waite (9213707), Robyn L. Marsh (11871170), Carlos A. Camargo (8782952), Paul Cardenas (368097), Anne B. Chang (6957173), William O. C. Cookson (7512737), Leah Cuthbertson (4720953), Wenkui Dai (167126), Mark L. Everard (11871173), Alain Gervaix (104954), J. Kirk Harris (138076), Kohei Hasegawa (3467948), Lucas R. Hoffman (8339448), Soo-Jong Hong (212914), Laurence Josset (240542), Matthew S. Kelly (11871176), Bong-Soo Kim (2187760), Yong Kong (224694), Shuai C. Li (11871179), Jonathan M. Mansbach (4347571), Asuncion Mejias (173484), George A. O’Toole (818759), Laura Paalanen (11871182), Marcos Pérez-Losada (159353), Melinda M. Pettigrew (11871185), Maxime Pichon (11871188), Octavio Ramilo (173513), Lasse Ruokolainen (281200), Olga Sakwinska (387792), Patrick C. Seed (11871191), Christopher J. van der Gast (8656728), Brandie D. Wagner (7249904), Hana Yi (490208), Edith T. Zemanick (11871194), Yuejie Zheng (428509), Naveen Pillarisetti (11871197), Michael W. Taylor (9213713)

مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, microbiota (16S), respiratory tract, respiratory infection, paediatrics, meta-analysis, individual participant data (IPD) meta-analysis

Relation: https://figshare.com/articles/dataset/Table_3_Bacterial_Signatures_of_Paediatric_Respiratory_Disease_An_Individual_Participant_Data_Meta-Analysis_XLSX/17426939

الاتاحة: https://doi.org/10.3389/fmicb.2021.711134.s003

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Background_comparison_of_relative_abundance_of_12_most_abundant_taxa_/16753608

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s001

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/TBL_comparison_/16753614

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s003

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Ordination_analysis_of_negative_control_samples_/16753611

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s002

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/_i_Staphylococcus_aureus_i_and_i_Streptococcus_mitis_i_group_/16753620

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s005

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Inflammation_across_age_/16753623

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s006

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Taxa_by_age_group_/16753617

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s004

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Clustering_analysis_/16753626

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s007

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Repeat_samples_/16753629

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s008

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Indications_and_primary_diagnoses_/16753632

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s009

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Dominant_taxa_/16753638

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s011

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Sample_characteristics_by_sequencing_/16753635

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s010

المؤلفون: John B. O’Connor (11529852), Madison M. Mottlowitz (11529855), Brandie D. Wagner (7249904), Kathleen L. Boyne (11529858), Mark J. Stevens (138084), Charles E. Robertson (138101), Jonathan K. Harris (3387353), Theresa A. Laguna (11529861)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Immunology, Infectious Diseases, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, streptococcus mitis <, provide valuable insight, obstructive lung disease, relevant clinical data, lower airway samples, heterogeneous disease controls, disease controls across, lower microbial diversity, +analysis%22">xlink "> analysis, cystic fibrosis samples, lower airway microbiota, characterize bacterial communities, disease controls, airway microbiota, %22">xlink ">, cystic fibrosis, bacterial communities, lower airways, increased diversity, clinical comparisons, bacterial burden, select genera

Relation: https://figshare.com/articles/figure/Comparison_to_culture_/16753641

الاتاحة: https://doi.org/10.1371/journal.pone.0257838.s012