المؤلفون: Jayousi, Faisal, Descombes, Xavier, Bouilhol, Emmanuel, Sudaka, Anne, van Obberghen-Schilling, Ellen, Blanc-Féraud, Laure

المساهمون: Morphologie et Images (MORPHEME), Inria Sophia Antipolis - Méditerranée (CRISAM), Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut de Biologie Valrose (IBV), Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA)-Signal, Images et Systèmes (Laboratoire I3S - SIS), Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis (I3S), Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA)-Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis (I3S), Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Institut de Biologie Valrose (IBV), Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA), Centre de Lutte contre le Cancer Antoine Lacassagne Nice (UNICANCER/CAL), UNICANCER-Université Côte d'Azur (UniCA), ANR-19-P3IA-0002,3IA@cote d'azur,3IA Côte d'Azur(2019)

المصدر: EUSIPCO 2024 - 32nd European signal processing conference ; https://inria.hal.science/hal-04738081 ; EUSIPCO 2024 - 32nd European signal processing conference, Aug 2024, Lyon, France

مصطلحات موضوعية: Fluorescence microscopy, Bioimage analysis, Circular statistics, Spatial tessellations, Extracellular matrix, [INFO.INFO-TS]Computer Science [cs]/Signal and Image Processing, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

جغرافية الموضوع: Lyon, France

الاتاحة: https://inria.hal.science/hal-04738081
https://inria.hal.science/hal-04738081v1/document
https://inria.hal.science/hal-04738081v1/file/0001656.pdf

المؤلفون: LEFEVRE, Edgar, BOUILHOL, Emmanuel, CHAUVIÈRE, Antoine, SOULEYREAU, Wilfried, DERIEPPE, Marie-Alix, TROTIER, Aurelien, MIRAUX, Sylvain, BIKFALVI, Andreas, RIBOT, Emeline, NIKOLSKI, Macha

مصطلحات موضوعية: Informatique [cs]/Bio-informatique [q-bio.QM]

Relation: https://oskar-bordeaux.fr/handle/20.500.12278/170330

الاتاحة: https://oskar-bordeaux.fr/handle/20.500.12278/170330
https://hdl.handle.net/20.500.12278/170330
https://doi.org/10.3389/fbinf.2022.999700

المؤلفون: Bouilhol, Emmanuel, Savulescu, Anca Flavia, Lefevre, Edgar, Dartigues, Benjamin, Brackin, Robyn, Nikolski, Macha

المساهمون: Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), University of Cape Town, Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Charité - UniversitätsMedizin = Charité - University Hospital Berlin

المصدر: EISSN: 2633-903X ; Biological Imaging ; https://hal.science/hal-03659677 ; Biological Imaging, 2022, pp.1-18. ⟨10.1017/S2633903X22000034⟩

مصطلحات موضوعية: smFISH image analysis, mRNA spot detection, Deep learning, [INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

Relation: hal-03659677; https://hal.science/hal-03659677; https://hal.science/hal-03659677/document; https://hal.science/hal-03659677/file/deepspot-a-deep-neural-network-for-rna-spot-enhancement-in-smfish-microscopy-images.pdf

الاتاحة: https://hal.science/hal-03659677
https://hal.science/hal-03659677/document
https://hal.science/hal-03659677/file/deepspot-a-deep-neural-network-for-rna-spot-enhancement-in-smfish-microscopy-images.pdf
https://doi.org/10.1017/S2633903X22000034

المؤلفون: Savulescu, Anca Flavia, Bouilhol, Emmanuel, Beaume, Nicolas, Nikolski, Macha

المساهمون: Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Centre de Bioinformatique de Bordeaux (CBIB), CGFB, ANR-11-INBS-0013,IFB (ex Renabi-IFB),Institut français de bioinformatique(2011)

المصدر: EISSN: 2589-0042 ; iScience ; https://hal.science/hal-03388153 ; iScience, 2021, pp.103298. ⟨10.1016/j.isci.2021.103298⟩

مصطلحات موضوعية: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: PUBMEDCENTRAL: PMC8571491

الاتاحة: https://hal.science/hal-03388153
https://hal.science/hal-03388153v1/document
https://hal.science/hal-03388153v1/file/S2589004221012670.pdf
https://doi.org/10.1016/j.isci.2021.103298

المؤلفون: Savulescu, Anca, Brackin, Robyn, Bouilhol, Emmanuel, Dartigues, Benjamin, Warrell, Jonathan, Pimentel, Mafalda, Beaume, Nicolas, Fortunato, Isabela, Dallongeville, Stephane, Boulle, Mikaël, Soueidan, Hayssam, Agou, Fabrice, Schmoranzer, Jan, Olivo-Marin, Jean-Christophe, Franco, Claudio, Gomes, Edgar, Nikolski, Macha, Mhlanga, Musa

المساهمون: University of Cape Town, Charité - UniversitätsMedizin = Berlin University Medicine, Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Yale University New Haven, Universidade de Lisboa = University of Lisbon = Université de Lisbonne (ULISBOA), Analyse d'images biologiques - Biological Image Analysis (BIA), Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Criblage chémogénomique et biologique (Plateforme) - Chemogenomic and Biological Screening Platform (PF-CCB), Institut Pasteur Paris (IP), École Doctorale Bio Sorbonne Paris Cité Paris (ED562 - BioSPC), Université Sorbonne Paris Cité (USPC)-Université Paris Cité (UPCité), Radboud University Nijmegen, This research has been supported by the following grants, all to M.M.M. V2YGE81 (to A.F.S.) and PG-V2KYPO7, TA 2011 011 from the Council for Industrial and Scientific Research (CSIR) (South Africa) and by a grant from the Emerging Research Area Program of The Department of Science and Technology (South Africa) Department of Science & Technology Center of Competence Grant, SA Medical Research Council SHIP grant, and CSIR Parliamentary Grant. M.M.M. and M.N. are Chan Zuckerberg Investigators of the Chan Zuckerberg Initiative – Human Cell Atlas program., We thank all members of the Gene Expression and Biophysics Laboratory (Mhlanga Lab). We thank N. Crosetto, and members of the L. Pelkmans lab, members of the J.-C. Olivo-Marin lab, K. Schauer, and members of the B. Goud lab for comments on the manuscript. A.F.S. is a recipient of a postdoctoral fellowship from the Claude Leon Foundation, South Africa., ANR-11-INBS-0013,IFB (ex Renabi-IFB),Institut français de bioinformatique(2011)

المصدر: ISSN: 2667-2375.

مصطلحات موضوعية: [SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC], [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: info:eu-repo/semantics/altIdentifier/pmid/35474672; PUBMED: 35474672; PUBMEDCENTRAL: PMC9017151

الاتاحة: https://hal.science/hal-03349483
https://hal.science/hal-03349483v1/document
https://hal.science/hal-03349483v1/file/1-s2.0-S266723752100120X-main.pdf
https://doi.org/10.1016/j.crmeth.2021.100068

المؤلفون: Bouilhol, Emmanuel, Barry, Thierno, Levet, Florian, Beghin, Anne, Viasnoff, Virgile, Galindo, Xareni, Galland, Rémi, Sibarita, Jean-Baptiste, Nikolski, Macha

المساهمون: Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Interdisciplinary Institute for Neuroscience Bordeaux (IINS), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)

المصدر: 10th International Conference on Bioimaging
https://hal.science/hal-04040453
10th International Conference on Bioimaging, Feb 2023, Lisbon, Portugal. pp.41-51, ⟨10.5220/0011623500003414⟩

مصطلحات موضوعية: [SDV]Life Sciences [q-bio], [INFO]Computer Science [cs]

جغرافية الموضوع: Lisbon, Portugal

Relation: hal-04040453; https://hal.science/hal-04040453

الاتاحة: https://hal.science/hal-04040453
https://doi.org/10.5220/0011623500003414

المؤلفون: Lagardère, Matthieu, Chamma, Ingrid, Bouilhol, Emmanuel, Nikolski, Macha, Thoumine, Olivier

المساهمون: Institut Interdisciplinaire des Neurosciences de Bordeaux, Centre National de la Recherche Scientifique (CNRS)

المصدر: ISSN: 2045-2322.

مصطلحات موضوعية: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: hal-03010357; https://hal.archives-ouvertes.fr/hal-03010357; https://hal.archives-ouvertes.fr/hal-03010357/document; https://hal.archives-ouvertes.fr/hal-03010357/file/Lagard%C3%A8re%20et%20al%20Sci%20Rep%202020.pdf

الاتاحة: https://hal.archives-ouvertes.fr/hal-03010357
https://hal.archives-ouvertes.fr/hal-03010357/document
https://hal.archives-ouvertes.fr/hal-03010357/file/Lagard%C3%A8re%20et%20al%20Sci%20Rep%202020.pdf
https://doi.org/10.1038/s41598-020-75814-y

المؤلفون: Bouilhol Emmanuel, Nikolski Macha, Dartigues Benjamin, Savulescu Anca

مصطلحات موضوعية: FISH, Microscopy

Relation: https://doi.org/10.5281/zenodo.8026600; https://doi.org/10.5281/zenodo.8026601; oai:zenodo.org:8026601

الاتاحة: https://doi.org/10.5281/zenodo.8026601

المؤلفون: Savulescu, Anca, Brackin, Robyn, Bouilhol, Emmanuel, Dartigues, Benjamin, Warrell, Jonathan, Pimentel, Mafalda, Dallongeville, Stéphane, Schmoranzer, Jan, Olivo-Marin, Jean-Christophe, Gomes, Edgar, Nikolski, Macha, Mhlanga, Musa

المساهمون: Division of Chemical Systems and Synthetic Biology, University of Cape Town-Faculty of Health Sciences, Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Analyse d'images biologiques - Biological Image Analysis (BIA), Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), Freie Universität Berlin, Analyse d'Images Quantitative (AIQ), Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS)

المصدر: https://hal.science/hal-02409081 ; 2019.

مصطلحات موضوعية: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: hal-02409081; https://hal.science/hal-02409081; https://hal.science/hal-02409081/document; https://hal.science/hal-02409081/file/536383v1.full.pdf; BIORXIV: 536383

الاتاحة: https://hal.science/hal-02409081
https://hal.science/hal-02409081/document
https://hal.science/hal-02409081/file/536383v1.full.pdf
https://doi.org/10.1101/536383

المؤلفون: Yacoub, Elhem, Sirand-Pugnet, Pascal, Barré, Aurélien, Blanchard, Alain, Hubert, Christophe, Maurier, Florence, Bouilhol, Emmanuel, Ben Abdelmoumen Mardassi, Boutheina

المساهمون: Laboratoire des Mycoplasmes, Institut Pasteur de Tunis, Pasteur Network (Réseau International des Instituts Pasteur)-Pasteur Network (Réseau International des Instituts Pasteur), Biologie du fruit et pathologie (BFP), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1 (UB), Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Centre Génomique Fonctionnelle Bordeaux Bordeaux (CGFB), Institut Polytechnique de Bordeaux-Université de Bordeaux Ségalen Bordeaux 2, This work was supported by the LR11IPT01 project of the Laboratory of Molecular Microbiology, Vaccinology and Biotechnology Development, funded by the Tunisian Ministry of High Education and Scientific Research.

المصدر: ISSN: 2169-8287 ; Genome Announcements ; https://riip.hal.science/pasteur-02015202 ; Genome Announcements, 2016, 4 (3), pp.e00558-16. ⟨10.1128/genomeA.00558-16⟩.

مصطلحات موضوعية: [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology

Relation: info:eu-repo/semantics/altIdentifier/pmid/27313300; PRODINRA: 358676; PUBMED: 27313300; PUBMEDCENTRAL: PMC4911479

الاتاحة: https://riip.hal.science/pasteur-02015202
https://riip.hal.science/pasteur-02015202v1/document
https://riip.hal.science/pasteur-02015202v1/file/Genome%20sequences%20of%20two%20Tunisian%20field%20strains%20of%20avian%20Mycoplasma.pdf
https://doi.org/10.1128/genomeA.00558-16

المؤلفون: Bouilhol, Emmanuel

المساهمون: Bordeaux, Nikolski, Macha

مصطلحات موضوعية: Deep Learning, Analyse d'image, Microscopie de fluorescence, Analyses spatiales, Image analysis, Fluorescent microscopy, Spatial analysis

Relation: http://www.theses.fr/2022BORD0418/document

الاتاحة: http://www.theses.fr/2022BORD0418/document

المؤلفون: Dartigues, Benjamin, Bouilhol, Emmanuel, Nikolski, Macha, Soueidan, Hayssam

مصطلحات موضوعية: FISH, Cellular Imaging, Microscopy, mRNA, Colocalization, Subcellular Distribution, Statistics

Relation: https://doi.org/10.5281/zenodo.5153513; https://doi.org/10.5281/zenodo.5153514; oai:zenodo.org:5153514

الاتاحة: https://doi.org/10.5281/zenodo.5153514

المؤلفون: Bouilhol, Emmanuel, Savulescu, Anca F., Lefevre, Edgar, Dartigues, Benjamin, Brackin, Robyn, Nikolski, Macha

المصدر: Biological Imaging; 2022, Vol. 2, p1-17, 17p

مصطلحات موضوعية: FLUORESCENCE, WOUND healing, DEEP learning, MESSENGER RNA, CONVOLUTIONAL neural networks

المؤلفون: Savulescu, Anca F., Brackin, Robyn, Bouilhol, Emmanuel, Dartigues, Benjamin, Warrell, Jonathan H., Pimentel, Mafalda R., Dallongeville, Stephane, Schmoranzer, Jan, Olivo-Marin, Jean-Christophe, Gomes, Edgar R., Nikolski, Macha, Mhlanga, Musa

المصدر: SSRN Electronic Journal ; ISSN 1556-5068

الاتاحة: http://dx.doi.org/10.2139/ssrn.3323373

المؤلفون: Savulescu, Anca F., Brackin, Robyn, Bouilhol, Emmanuel, Dartigues, Benjamin, Warrell, Jonathan H., Pimentel, Mafalda R., Beaume, Nicolas, Fortunato, Isabela C., Dallongeville, Stephane, Boulle, Mikaël, Soueidan, Hayssam, Agou, Fabrice, Schmoranzer, Jan, Olivo-Marin, Jean-Christophe, Franco, Claudio A., Gomes, Edgar R., Nikolski, Macha, Mhlanga, Musa M.

المصدر: Cell Reports Methods; September 2021, Vol. 1 Issue: 5