المؤلفون: Toews, Sabrina, Wacker, Anna, Faison, Edgar M, Duchardt-ferner, Elke, Richter, Christian, Mathieu, Daniel, Bottaro, Sandro, Zhang, Qi, Schwalbe, Harald

المصدر: Toews , S , Wacker , A , Faison , E M , Duchardt-ferner , E , Richter , C , Mathieu , D , Bottaro , S , Zhang , Q & Schwalbe , H 2024 , ' The 5′-terminal stem–loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH ' , Nucleic acids symposium series , vol. 52 , no. 13 , pp. 7971–7986 . https://doi.org/10.1093/nar/gkae477

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/the-5terminal-stemloop-rna-element-of-sarscov2-features-highly-dynamic-structural-elements-that-are-sensitive-to-differences-in-cellular-ph(d05b17ef-38be-42e2-8b6b-ece7bcd0d43b).html
https://doi.org/10.1093/nar/gkae477
https://curis.ku.dk/ws/files/399176670/gkae477.pdf

المؤلفون: Orioli, Simone, Larsen, Andreas Haahr, Bottaro, Sandro, Lindorff-Larsen, Kresten

مصطلحات موضوعية: Physics - Chemical Physics, Physics - Biological Physics

URL الوصول: http://arxiv.org/abs/1909.06780

المؤلفون: Bonomi, Massimiliano, Bussi, Giovanni, Camilloni, Carlo, Tribello, Gareth A, Banáš, Pavel, Barducci, Alessandro, Bernetti, Mattia, Bolhuis, Peter G, Bottaro, Sandro, Branduardi, Davide, Capelli, Riccardo, Carloni, Paolo, Ceriotti, Michele, Cesari, Andrea, Chen, Haochuan, Chen, Wei, Colizzi, Francesco, De, Sandip, De La Pierre, Marco, Donadio, Davide, Drobot, Viktor, Ensing, Bernd, Ferguson, Andrew L, Filizola, Marta, Fraser, James S, Fu, Haohao, Gasparotto, Piero, Gervasio, Francesco Luigi, Giberti, Federico, Gil-Ley, Alejandro, Giorgino, Toni, Heller, Gabriella T, Hocky, Glen M, Iannuzzi, Marcella, Invernizzi, Michele, Jelfs, Kim E, Jussupow, Alexander, Kirilin, Evgeny, Laio, Alessandro, Limongelli, Vittorio, Lindorff-Larsen, Kresten, Löhr, Thomas, Marinelli, Fabrizio, Martin-Samos, Layla, Masetti, Matteo, Meyer, Ralf, Michaelides, Angelos, Molteni, Carla, Morishita, Tetsuya, Nava, Marco, Paissoni, Cristina, Papaleo, Elena, Parrinello, Michele, Pfaendtner, Jim, Piaggi, Pablo, Piccini, GiovanniMaria, Pietropaolo, Adriana, Pietrucci, Fabio, Pipolo, Silvio, Provasi, Davide, Quigley, David, Raiteri, Paolo, Raniolo, Stefano, Rydzewski, Jakub, Salvalaglio, Matteo, Sosso, Gabriele Cesare, Spiwok, Vojtěch, Šponer, Jiří, Swenson, David WH, Tiwary, Pratyush, Valsson, Omar, Vendruscolo, Michele, Voth, Gregory A, White, Andrew

المصدر: Nature Methods. 16(8)

مصطلحات موضوعية: Biological Sciences, Humans, Models, Molecular, Molecular Conformation, Molecular Dynamics Simulation, Reproducibility of Results, Software, PLUMED consortium, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2h52c6qj
https://escholarship.org/content/qt2h52c6qj/qt2h52c6qj.pdf

المؤلفون: Poblete, Simón, Bottaro, Sandro, Bussi, Giovanni

المصدر: Nucleic Acids Res. 46, 1674 (2018)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics

URL الوصول: http://arxiv.org/abs/1711.00741

المؤلفون: Poblete, Simón, Bottaro, Sandro, Bussi, Giovanni

المصدر: Biochem. Biophys. Res. Commun. 498, 352 (2018)

مصطلحات موضوعية: Physics - Biological Physics, Physics - Computational Physics, Quantitative Biology - Biomolecules

URL الوصول: http://arxiv.org/abs/1709.08691

المؤلفون: Oxenfarth, Andreas, Kümmerer, Felix, Bottaro, Sandro, Schnieders, Robbin, Pinter, György, Jonker, Hendrik R.A., Fürtig, Boris, Richter, Christian, Blackledge, Martin, Lindorff-Larsen, Kresten, Schwalbe, Harald

المصدر: Oxenfarth , A , Kümmerer , F , Bottaro , S , Schnieders , R , Pinter , G , Jonker , H R A , Fürtig , B , Richter , C , Blackledge , M , Lindorff-Larsen , K & Schwalbe , H 2023 , ' Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop ' , Journal of the American Chemical Society , vol. 145 , no. 30 , pp. 16557-16572 . https://doi.org/10.1021/jacs.3c03578

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/integrated-nmrmolecular-dynamics-determination-of-the-ensemble-conformation-of-a-thermodynamically-stable-cuug-rna-tetraloop(e1c571de-79a6-4c7c-af27-41e0ed71d50b).html
https://doi.org/10.1021/jacs.3c03578
https://curis.ku.dk/ws/files/362687231/jacs.3c03578.pdf

المؤلفون: Cagiada, Matteo, Bottaro, Sandro, Lindemose, Søren, Schenstrøm, Signe M., Stein, Amelie, Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten

المصدر: Cagiada , M , Bottaro , S , Lindemose , S , Schenstrøm , S M , Stein , A , Hartmann-Petersen , R & Lindorff-Larsen , K 2023 , ' Discovering functionally important sites in proteins ' , Nature Communications , vol. 14 , no. 1 , 4175 . https://doi.org/10.1038/s41467-023-39909-0

وصف الملف: application/pdf

الاتاحة: https://curis.ku.dk/portal/da/publications/discovering-functionally-important-sites-in-proteins(ab7dcc3b-ced4-4b65-b0e5-685f95689654).html
https://doi.org/10.1038/s41467-023-39909-0
https://curis.ku.dk/ws/files/360248939/s41467_023_39909_0.pdf

المؤلفون: Sherwood, Anna V, Rivera-Rangel, Lizandro R, Ryberg, Line A, Larsen, Helena S, Anker, Klara M, Costa, Rui, Vågbø, Cathrine B, Jakljevič, Eva, Pham, Long V, Fernandez-Antunez, Carlota, Indrisiunaite, Gabriele, Podolska-Charlery, Agnieszka, Grothen, Julius E R, Langvad, Nicklas W, Fossat, Nicolas, Offersgaard, Anna, Al-Chaer, Amal, Nielsen, Louise, Kuśnierczyk, Anna, Sølund, Christina, Weis, Nina, Gottwein, Judith M, Holmbeck, Kenn, Bottaro, Sandro, Ramirez, Santseharay, Bukh, Jens, Scheel, Troels K H, Vinther, Jeppe

المصدر: Sherwood , A V , Rivera-Rangel , L R , Ryberg , L A , Larsen , H S , Anker , K M , Costa , R , Vågbø , C B , Jakljevič , E , Pham , L V , Fernandez-Antunez , C , Indrisiunaite , G , Podolska-Charlery , A , Grothen , J E R , Langvad , N W , Fossat , N , Offersgaard , A , Al-Chaer , A , Nielsen , L , Kuśnierczyk , A , Sølund , C , Weis , N , Gottwein , J M , ....

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/hepatitis-c-virus-rna-is-5capped-with-flavin-adenine-dinucleotide(ed6e24c9-0c64-49a3-a161-ac52cb160c27).html
https://doi.org/10.1038/s41586-023-06301-3
https://curis.ku.dk/ws/files/411064108/Hepatitis_C_virus_RNA.pdf

المؤلفون: Kührová, Petra, Best, Robert B., Bottaro, Sandro, Bussi, Giovanni, Šponer, Jiří, Otyepka, Michal, Banáš, Pavel

المصدر: J. Chem. Theory Comput. 2016, 12 (9), pp 4534-4548

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1609.08276

المؤلفون: Bottaro, Sandro, Banáš, Pavel, Sponer, Jiri, Bussi, Giovanni

المصدر: J. Phys. Chem. Lett. 7, 4032 (2016)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1609.07898

المؤلفون: Gil-Ley, Alejandro, Bottaro, Sandro, Bussi, Giovanni

المصدر: J. Chem. Theory Comput. 12, 2790 (2016)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Condensed Matter - Statistical Mechanics, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1605.00934

المؤلفون: Bottaro, Sandro, Gil-Ley, Alejandro, Bussi, Giovanni

المصدر: Nucleic Acids Research 44, 5883 (2016)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1603.08952

المؤلفون: Pinamonti, Giovanni, Bottaro, Sandro, Micheletti, Cristian, Bussi, Giovanni

المصدر: Nucleic Acids Res. 43, 7260 (2015)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Condensed Matter - Statistical Mechanics, Physics - Biological Physics, Physics - Chemical Physics

URL الوصول: http://arxiv.org/abs/1506.09178

المؤلفون: Di Palma, Francesco, Bottaro, Sandro, Bussi, Giovanni

المصدر: BMC Bioinformatics 2015, 16(Suppl 9):S6

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics

URL الوصول: http://arxiv.org/abs/1504.07392

المؤلفون: Bottaro, Sandro, Di Palma, Francesco, Bussi, Giovanni

المصدر: RNA & Disease 2, e544 (2015)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1502.05667

المؤلفون: Ferrarotti, Marco Jacopo, Bottaro, Sandro, Pérez-Villa, Andrea, Bussi, Giovanni

المصدر: J. Chem. Theory Comput. 11, 139 (2015)

مصطلحات موضوعية: Physics - Computational Physics, Condensed Matter - Statistical Mechanics, Physics - Biological Physics, Physics - Chemical Physics

URL الوصول: http://arxiv.org/abs/1412.3916

المؤلفون: Bottaro, Sandro, Di Palma, Francesco, Bussi, Giovanni

المصدر: Nucleic Acids Res. 42, 13306 (2014)

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Physics - Biological Physics, Physics - Chemical Physics, Physics - Computational Physics

URL الوصول: http://arxiv.org/abs/1410.1271

المؤلفون: Bergonzo, Christina, Grishaev, Alexander, Bottaro, Sandro

المصدر: Bergonzo , C , Grishaev , A & Bottaro , S 2022 , ' Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments ' , RNA , vol. 28 , no. 7 , pp. 937-946 . https://doi.org/10.1261/rna.078888.121

مصطلحات موضوعية: integrative structural biology, molecular dynamics, NMR, SAXS

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/conformational-heterogeneity-of-ucaauc-rna-oligonucleotide-from-molecular-dynamics-simulations-saxs-and-nmr-experiments(4c8e52ff-71e8-4c14-820b-01dd3c754034).html
https://doi.org/10.1261/rna.078888.121
https://curis.ku.dk/ws/files/312371349/RNA_2022_Bergonzo_937_46.pdf

المؤلفون: Hamelryck, Thomas, Borg, Mikael, Paluszewski, Martin, Paulsen, Jonas, Frellsen, Jes, Andreetta, Christian, Boomsma, Wouter, Bottaro, Sandro, Ferkinghoff-Borg, Jesper

المصدر: Hamelryck T, Borg M, Paluszewski M, Paulsen J, Frellsen J, et al. (2010) Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized. PLoS ONE 5(11): e13714

مصطلحات موضوعية: Quantitative Biology - Biomolecules, Condensed Matter - Statistical Mechanics

URL الوصول: http://arxiv.org/abs/1008.4006

المؤلفون: Bottaro, Sandro, Lindorff-Larsen, Kresten

المصدر: Science, 2018 Jul . 361(6400), 355-360.

URL الوصول: https://www.jstor.org/stable/26497528