المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/journal_contribution/Information_on_PCR_for_confirming_the_presence_of_i_Merlin_i_elements_in_i_Perkinsela_i_sp_/14550028

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s004

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/journal_contribution/S1_Raw_images_-/14550067

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s016

المؤلفون: Christoph M Deeg, Cheryl-Emiliane T Chow, Curtis A Suttle

المصدر: eLife, Vol 7 (2018)

مصطلحات موضوعية: Bodo saltans, NCLDV, Giant Viruses, Bodo saltans virus, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/33014; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/3f6c954acd604515bf4949f6d48599f7

المؤلفون: N. Davidovich A., O. Davidovich I., Yu. Podunay A., S. Polyakova L., R. Gastineau, Н. Давидович А., О. Давидович И., Ю. Подунай А., С. Полякова Л., Р. Гастиньо

المساهمون: Исследование выполнено в рамках государственного задания по теме «Изучение фундаментальных физических, физиолого-биохимических, репродуктивных, популяционных и поведенческих характеристик морских гидробионтов», № госрегистрации АААА-А19-119012490045-0

المصدر: Vestnik Moskovskogo universiteta. Seriya 16. Biologiya; Том 74, № 2 (2019); 80–86 ; Вестник Московского университета. Серия 16. Биология; Том 74, № 2 (2019); 80–86 ; 0137-0952

مصطلحات موضوعية: diatoms, cultivation, kinetoplastidae, contaminant, Bodo saltans, amphotericin B, диатомовые водоросли, культивирование, кинетопластиды, контаминант, амфотерицин В

وصف الملف: application/pdf

Relation: https://vestnik-bio-msu.elpub.ru/jour/article/view/739/462; Mann D.G. Size and sex // The diatom world. Cellular origin, life in extreme habitats and astrobiology. Vol. 19 / Eds. J. Seckbach and J.P. Kociolek. Dordrecht: Springer, 2011. P. 145—166.; Round F.E., Crawford R.M., Mann D.G. The Diatoms. Biology and morphology of the genera. Cambridge: Cambridge Univ. Press, 1990. 747 pp.; Geitler L. Reproduction and life history in diatoms // Botanical Rev. 1935. Vol. 1. N 5. P. 149—161.; Полякова С.Л., Давидович О.И., Подумай Ю.А., Давидович Н.А. Модификация среды ESAW, используемой для культивирования морских диатомовых водорослей // Морской биол. журн. 2018. Т. 3. № 2. С 73—78.; Andersen RA, Berges J.A., Harrison P.J., Watanabe M.M. Recipes for freshwater and seawater media // Algal culturing techniques / Ed. R.A. Andersen. N.Y.: Elsevier Academic Press, 2005. P. 429—538.; Gastineau R, Lemieux C, Turmel M, Davidovich N.A., Davidovich O.I., Mouget J.-L, Witkowski A. Mitogenome sequence of a Black Sea isolate of the kinetoplastid Bodo saltans // Mitochondrial DNA Part B. 2018. Vol. 3. N 2. P. 970-971.; Scheckenbach F, Wylezich C, Mylnikov A.P., Weitere M, Arndt H. Molecular comparisons of freshwater and marine isolates of the same morphospecies of heterotrophic flagellates // Appl. Environ. Microbiol. 2006. Vol. 72. N 10. P. 6638-6643.; Wood A.M., Everroad R.C., Wingard L.M. Measuring growth rates in microalgal cultures // Algal culturing techniques / Ed. R.A. Andersen. N.Y.: Elsevier Academic Press, 2005. P. 269-286.; Glantz S.A. Primer of biostatistics. N.Y.: McGraw-Hill, Health Professions Division, 1997.473pp.; Droop S.J.M. A procedure for routine purification of algal cultures with antibiotics // Br. Phycol. Bull. 1967. Vol. 3. N 2. P. 295-297.; Guillard R.R.L. Purification methods for microalgae // Algal culturing techniques / Ed. R.A. Andersen. N.Y.: Elsevier Academic Press, 2005. P. 117-132.; Mitchell G.C., Baker J.H., Sleigh M.A. Feeding of a freshwater flagellate, Bodo saltans, on diverse bacteria // J. Eukar. Microbiol. 1988. Vol. 35. N 2. P. 219-222.; Жуков Б.Ф. Атлас пресноводных гетеротрофных жгутиконосцев (биология, экология, систематика). Рыбинск: Рыб. Дом печати, 1993. 160 с.; Arndt H, Dietrich D, Auer B, Cleven E.-J, Grafenhan T, Weitere M, Mylnikov AP. Functional diversity of heterotrophic flagellates in aquatic ecosystems // The flagellates: unity, diversity and evolution. Vol. 59 / Eds. B.S.C. Leadbeater and J.C. Green. London: Taylor and Francis, 2000. P. 240-268.; von der Heyden S, Cavalier-Smith T. Culturing and environmental DNA sequencing uncover hidden kinetoplastid biodiversity and a major marine clade within ancestrally freshwater Neobodo designis // Intern. J. Syst. Evol. Microbiol. 2005.Vol. 55. N 6. P. 2605-2621.; Vickerman K, Appleton P. L, Clarke K. J., Moreira D. Aurigamonas solis n. gen., n. sp., a soil-dwelling predator with unusual helioflagellate organisation and belonging to a novel clade within the Cercozoa // Protist. 2005. Vol. 156. N 3. P. 335-354.; Yazaki E, Ishikawa S.A., Kume K, Kumagai A., Kamaishi T, Tanifuji G., Hashimoto T., Inagaki Y. Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including parasitic species for better understanding transitions from a free-living to a parasitic lifestyle // Genes Genet. Syst. 2017. Vol. 92. N 1. P. 35-42.; Deeg C.M., Chow C.-E.T., Suttle C.A. The kinetoplastid-infecting Bodo saltans virus (BsV), a window into the most abundant giant viruses in the sea // eLife. 2018. Vol. 7: e33014.; https://vestnik-bio-msu.elpub.ru/jour/article/view/739

الاتاحة: https://vestnik-bio-msu.elpub.ru/jour/article/view/739

المؤلفون: Kristina I. Prokina, D. A. Philippov

المصدر: Inland Water Biology. 14:500-516

مصطلحات موضوعية: food.ingredient, biology, Bodo saltans, Biodiversity, Zoology, Species diversity, Aquatic Science, biology.organism_classification, Cell morphology, Intraspecific competition, Salpingoeca, Hypnales, food, Common species, Ecology, Evolution, Behavior and Systematics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::3dc4aca012cd0d15d58935d78a833a60
https://doi.org/10.1134/s1995082921050138

المؤلفون: Romain Gastineau, Claude Lemieux, Monique Turmel, Nikolaï A. Davidovich, Olga I. Davidovich, Jean-Luc Mouget, Andrzej Witkowski

المصدر: Mitochondrial DNA. Part B. Resources, Vol 3, Iss 2, Pp 968-969 (2018)

مصطلحات موضوعية: bodo saltans, kinetoplastida, maxicircle, next generation seqencing, black sea, Genetics, QH426-470

Relation: http://dx.doi.org/10.1080/23802359.2018.1507654; https://doaj.org/toc/2380-2359; https://doaj.org/article/07c183bee27745338f2598abc357d04e

الاتاحة: https://doi.org/10.1080/23802359.2018.1507654
https://doaj.org/article/07c183bee27745338f2598abc357d04e

المؤلفون: Stefanos Siozios, Daniel J. Rigden, Samriti Midha, Andrew P. Jackson, Gregory D. D. Hurst

المصدر: The ISME Journal

مصطلحات موضوعية: Bacterial genome size, medicine.disease_cause, Microbiology, Genome, Article, Microbial ecology, 03 medical and health sciences, medicine, Kinetoplastida, Symbiosis, Phylogeny, Ecology, Evolution, Behavior and Systematics, Alphaproteobacteria, 030304 developmental biology, Comparative genomics, Genetics, 0303 health sciences, Bacteria, Endosymbiosis, Bodo saltans, biology, 030306 microbiology, Circular bacterial chromosome, fungi, Eukaryota, Protist, Toxin-Antitoxin Systems, biochemical phenomena, metabolism, and nutrition, biology.organism_classification

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa9a947054a933450077d9661d052f47
https://doi.org/10.1038/s41396-020-00879-6

المؤلفون: Ignacio Miguel Durante, Anzhelika Butenko, Vyacheslav Yurchenko, Julius Lukeš, Hassan Hashimi, Vendula Rašková, Arzuv Charyyeva, Michaela Svobodova

المصدر: Genome Biology and Evolution

مصطلحات موضوعية: AcademicSubjects/SCI01140, receptor, trypanosomatid, Trypanosoma brucei, Evolution, Molecular, 03 medical and health sciences, Phylogenetics, Gene Duplication, biology.animal, parasitic diseases, Genetics, Kinetoplastida, Clade, Phylogeny, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, 0303 health sciences, biology, Bodo saltans, Phylogenetic tree, 030306 microbiology, fungi, AcademicSubjects/SCI01130, Vertebrate, biology.organism_classification, Up-Regulation, phylogenetics, Evolutionary biology, Host-Pathogen Interactions, Trypanosoma, Trypanosomatina, Genome, Protozoan, oxygen, Adenylyl Cyclases, Research Article, adenylate cyclase

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc0c1f77429791849edbb3cfafe12ac1
https://doi.org/10.1093/gbe/evaa226

المؤلفون: Cyndia Mara Bezerra Dos Santos, Adriana Ludwig, Yasmin Carla Ribeiro, Ana Luisa Kalb Lopes, Marco Aurélio Krieger, Danila Syriani Veluza, Lizandra Jaqueline Robe

المصدر: Mobile DNA, Vol 10, Iss 1, Pp 1-19 (2019)
Mobile DNA

مصطلحات موضوعية: Transposable element, VIPeR, Retroelements, lcsh:QH426-470, Retrotransposon, Genome, 03 medical and health sciences, 0302 clinical medicine, Clade, Molecular Biology, 030304 developmental biology, 0303 health sciences, Phylogenetic tree, Bodo saltans, biology, Research, biology.organism_classification, Tyrosine recombinase, Hepadnavirus, lcsh:Genetics, Phage integrase, Evolutionary biology, Trypanosoma, Transposable elements, DIRS, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::269840aa98067bf0ef6c4b14c6f338c2
http://link.springer.com/article/10.1186/s13100-019-0175-2

المؤلفون: Olga I. Davidovich, Yu. A. Podunay, S. L. Polyakova, Romain Gastineau, N. A. Davidovich

المصدر: Moscow University Biological Sciences Bulletin. 74:63-68

مصطلحات موضوعية: 0303 health sciences, biology, Bodo saltans, Microorganism, 030302 biochemistry & molecular biology, Human decontamination, biology.organism_classification, Climaconeis, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Diatom, Algae, Botany, Protozoa, General Agricultural and Biological Sciences, Bacteria, 030304 developmental biology, General Environmental Science

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::d6a6d098f4a1fc976ee6d79013110184
https://doi.org/10.3103/s0096392519020032

المؤلفون: Roberto Docampo, Fatma Gomaa

مصطلحات موضوعية: Plasmid, Bodo saltans, biology, Chemistry, Electroporation, Transfection, biology.organism_classification, Molecular biology, Green fluorescent protein

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::9ca080173999d38728d0c989d675baa4
https://doi.org/10.17504/protocols.io.bxbwpipe

المؤلفون: Roberto Docampo, Fatma Gomaa

مصطلحات موضوعية: Real-time polymerase chain reaction, Bodo saltans, Gene expression, medicine, RNA extraction, Neomycin, Biology, biology.organism_classification, Molecular biology, medicine.drug

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::6768b2b21bbce70330e4243e36bca548
https://doi.org/10.17504/protocols.io.bxbxpipn

المؤلفون: Stefanos Siozios, Andrew P. Jackson, Daniel J. Rigden, Samriti Midha, Gregory D. D. Hurst

مصطلحات موضوعية: Genetics, Comparative genomics, Endosymbiosis, Bodo saltans, Circular bacterial chromosome, fungi, Kinetoplastida, Protist, Bacterial genome size, biochemical phenomena, metabolism, and nutrition, Biology, biology.organism_classification, medicine.disease_cause, Genome, medicine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::c6ac37851a206c71ca23639380b25cbe
https://doi.org/10.1101/2020.07.24.217133

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/figure/Alignment_of_flanking_regions_of_most_conserved_copies_of_i_Merlin_i_family_1_from_i_Sy_i_i_kawagutii_i_Sy_k_F1_/14550019

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s001

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/figure/Bayesian_tree_LG_G_of_i_Merlin_i_and_IS_i_1595_i_group_sequences_/14550025

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s003

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/dataset/_i_Merlin_i_-related_proteins_identified_by_blastp_/14550040

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s007

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/figure/Secondary_structure_prediction_of_i_Merlin_i_reference_protein_from_i_Perkinsela_i_sp_modeled_used_Phyre2_/14550022

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s002

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/dataset/Sequences_analyzed_in_this_work_from_Discoba_Metamonada_Rodophyceae_and_Alveolata_/14550046

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s009

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/dataset/Summary_of_blastp_and_tblastn_against_the_major_taxonomic_groups_/14550055

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s012

المؤلفون: Ana Luisa Kalb Lopes (10757518), Eva Kriegová (5146508), Julius Lukeš (122896), Marco Aurélio Krieger (6892649), Adriana Ludwig (5111504)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Evolutionary Biology, Ecology, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Merlin families, animal genomes, kinetoplastid flagellates, reading frames, kinetoplastid protists DNA transposons, DNA sequences, DNA transposons, host genome, trees support, Merlin superfamily, mobilization capacity, Merlin transposase, transposon superfamily Merlin, gene emergence, prokaryotic insertion sequences, Bodo saltans, DNA transposon

Relation: https://figshare.com/articles/dataset/Alignment_of_the_conserved_transposase_domain_DDE_Tnp_IS1595_of_i_Merlin_i_IS_i_1595_i_used_to_generate_the_tree_shown_in_S3_Fig_/14550034

الاتاحة: https://doi.org/10.1371/journal.pone.0251133.s006