المؤلفون: Abueg, L.A.L., Afgan, E., Allart, O., Awan, A.H., Bacon, W.A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C.J., Burke, M.L., Capon, P.K., Čech, M., Chavero-Díez, M., Chilton, J.M., Collins, T.J., Coppens, F., Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P.F., de Koning, W., Demko, M., DeSanto, A., Domínguez Begines, J.M., Doyle, M.A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M.C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A.N., Goonasekera, N.A., Goué, N., Griffin, T.J., Grüning, B.A., Guerler, A., Gundersen, S., Gustafsson, O.J.R., Hall, C., Harrop, T.W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H.-R., Hyde, C.J., Jagtap, P.D., Jakiela, J., Johnson, J.E., Joshi, J., Jossé, M., Jum'ah, Khaled, Kalaš, M., Kamieniecka, Katarzyna, Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L.S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P.A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T.M., Oba, A.J., Ostrovsky, A., Polunina, P.V., Poterlowicz, Krzysztof, Price, E.J., Price, G.R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M.T., Savchenko, V., Savchenko, D., Schatz, M.C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S.K., Suderman, K., Syme, A.E., Tangaro, M.A., Tedds, J.A., Tekman, M., Thang, W.C.M., Thanki, A.S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G.R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P., Zoabi, R.

مصطلحات موضوعية: Galaxy platform

الاتاحة: http://hdl.handle.net/10454/19930

المؤلفون: Apollonio N., Blankenberg D., Cumbo F., Franciosa P. G., Santoni D.

المساهمون: Apollonio, N., Blankenberg, D., Cumbo, F., Franciosa, P. G., Santoni, D.

مصطلحات موضوعية: network, homophily, python tool

Relation: info:eu-repo/semantics/altIdentifier/pmid/36440918; info:eu-repo/semantics/altIdentifier/wos/WOS:001025519200006; volume:39; issue:1; firstpage:1; lastpage:3; numberofpages:3; journal:BIOINFORMATICS; https://hdl.handle.net/11573/1665277; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85145425335

الاتاحة: https://hdl.handle.net/11573/1665277
https://doi.org/10.1093/bioinformatics/btac763

المؤلفون: Ostrovsky, AE, Mahmoud, A, Lonie, AJ, Syme, A, Fouilloux, A, Bretaudeau, A, Nekrutenko, A, Kumar, A, Eschenlauer, AC, DeSanto, AD, Guerler, A, Serrano-Solano, B, Batut, B, Gruening, BA, Langhorst, BW, Carr, B, Raubenolt, BA, Hyde, CJ, Bromhead, CJ, Barnett, CB, Royaux, C, Gallardo, C, Blankenberg, D, Fornika, DJ, Baker, D, Bouvier, D, Clements, D, Morais, DADL, Tabernero, DL, Lariviere, D, Nasr, E, Afgan, E, Zambelli, F, Heyl, F, Psomopoulos, F, Coppens, F, Price, GR, Cuccuru, G, Le Corguille, G, Von Kuster, G, Akbulut, GG, Rasche, H, Hans-Rudolf, H, Eguinoa, I, Makunin, I, Ranawaka, IJ, Taylor, JP, Joshi, J, Hillman-Jackson, J, Goecks, J, Chilton, JM, Kamali, K, Suderman, K, Poterlowicz, K, Yvan, LB, Lopez-Delisle, L, Sargent, L, Bassetti, ME, Tangaro, MA, van den Beek, M, Cech, M, Bernt, M, Fahrner, M, Tekman, M, Foell, MC, Schatz, MC, Crusoe, MR, Roncoroni, M, Kucher, N, Coraor, N, Stoler, N, Rhodes, N, Soranzo, N, Pinter, N, Goonasekera, NA, Moreno, PA, Videm, P, Melanie, P, Mandreoli, P, Jagtap, PD, Gu, Q, Weber, RJM, Lazarus, R, Vorderman, RHP, Hiltemann, S, Golitsynskiy, S, Garg, S, Bray, SA, Gladman, SL, Leo, S, Mehta, SP, Griffin, TJ, Jalili, V, Yves, V, Wen, V, Nagampalli, VK, Bacon, WA, de Koning, W, Maier, W, Briggs, PJ

Relation: pii: 6572001; Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., DeSanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Gruening, B. A., Langhorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J. ,. Briggs, P. J. (2022). The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. NUCLEIC ACIDS RESEARCH, 50 (W1), pp.W345-W351. https://doi.org/10.1093/nar/gkac247.; http://hdl.handle.net/11343/310627

الاتاحة: http://hdl.handle.net/11343/310627

المؤلفون: Ostrovsky, A.E., Mahmoud, A., Lonie, A., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A.C., DeSanto, A.D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B.A., Langhorst, B.W., Carr, B., Blankenberg, D., Goecks, J., Bernt, Matthias, Schatz, M.C., The Galaxy Community

المصدر: ISSN: 0305-1048.

وصف الملف: application/pdf

Relation: https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=26112; https://dx.doi.org/10.1093/nar/gkac247

الاتاحة: https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=26112
https://doi.org/10.1093/nar/gkac247

المؤلفون: VijayKrishna, N., Joshi, J., Coraor, N., Hillman-Jackson, J., Bouvier, D., van den Beek, M., Eguinoa, I., Coppens, F., Davis, J., Stolarczyk, M., Sheffield, N.C., Gladman, S., Cuccuru, G., Grüning, B., Soranzo, N., Rasche, H., Langhorst, B.W., Bernt, Matthias, Fornika, D., de Lima Morais, D.A., Barrette, M., van Heusden, P., Petrillo, M., Puertas-Gallardo, A., Patak, A., Hotz, H.-R., Blankenberg, D.

المصدر: ISSN: 2635-0041.

وصف الملف: application/pdf

Relation: https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=23304; https://dx.doi.org/10.1093/bioadv/vbac030

الاتاحة: https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=23304
https://doi.org/10.1093/bioadv/vbac030

المؤلفون: Tekman, M, Batut, B, Ostrovsky, A, Antoniewski, C, Clements, D, Ramirez, F, Etherington, GJ, Hotz, H-R, Scholtalbers, J, Manning, JR, Bellenger, L, Doyle, MA, Heydarian, M, Huang, N, Soranzo, N, Moreno, P, Mautner, S, Papatheodorou, I, Nekrutenko, A, Taylor, J, Blankenberg, D, Backofen, R, Gruening, B

Relation: pii: 5931798; Tekman, M., Batut, B., Ostrovsky, A., Antoniewski, C., Clements, D., Ramirez, F., Etherington, G. J., Hotz, H. -R., Scholtalbers, J., Manning, J. R., Bellenger, L., Doyle, M. A., Heydarian, M., Huang, N., Soranzo, N., Moreno, P., Mautner, S., Papatheodorou, I., Nekrutenko, A. ,. Gruening, B. (2020). A single-cell RNA-sequencing training and analysis suite using the Galaxy framework. GIGASCIENCE, 9 (10), https://doi.org/10.1093/gigascience/giaa102.; http://hdl.handle.net/11343/251731

الاتاحة: http://hdl.handle.net/11343/251731

المؤلفون: Baker, D, van den Beek, M, Blankenberg, D, Bouvier, D, Chilton, J, Coraor, N, Coppens, F, Eguinoa, I, Gladman, S, Gruening, B, Keener, N, Lariviere, D, Lonie, A, Pond, SK, Maier, W, Nekrutenko, A, Taylor, J, Weaver, S

المساهمون: Coyne, CB

Relation: pii: PPATHOGENS-D-20-00400; Baker, D., van den Beek, M., Blankenberg, D., Bouvier, D., Chilton, J., Coraor, N., Coppens, F., Eguinoa, I., Gladman, S., Gruening, B., Keener, N., Lariviere, D., Lonie, A., Pond, S. K., Maier, W., Nekrutenko, A., Taylor, J. & Weaver, S. (2020). No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics. PLOS PATHOGENS, 16 (8), https://doi.org/10.1371/journal.ppat.1008643.; http://hdl.handle.net/11343/245153

الاتاحة: http://hdl.handle.net/11343/245153

المؤلفون: Chapman, LM, Spies, N, Pai, P, Lim, CS, Carroll, A, Narzisi, G, Watson, CM, Proukakis, C, Clarke, WE, Nariai, N, Dawson, E, Jones, G, Blankenberg, D, Brueffer, C, Xiao, C, Kolora, SRR, Alexander, N, Wolujewicz, P, Ahmed, A, Smith, G, Shehreen, S, Wenger, AM, Salit, M, Zook, JM

المصدر: PLoS Computational Biology , 16 (6) , Article e1007933. (2020) (In press).

وصف الملف: text

Relation: https://discovery.ucl.ac.uk/id/eprint/10102300/1/journal.pcbi.1007933.pdf; https://discovery.ucl.ac.uk/id/eprint/10102300/

الاتاحة: https://discovery.ucl.ac.uk/id/eprint/10102300/1/journal.pcbi.1007933.pdf
https://discovery.ucl.ac.uk/id/eprint/10102300/

المؤلفون: Afgan, E, Baker, D, Batut, B, van Beek, M, Bouvier, D, Cech, M, Chilton, J, Clements, D, Coraor, N, Gruning, BA, Guerler, A, Hillman-Jackson, J, Hiltemann, Saskia, Jalili, V, Rasche, H, Soranzo, N, Goecks, J, Taylor, J, Nekrutenko, A, Blankenberg, D

المصدر: Afgan , E , Baker , D , Batut , B , van Beek , M , Bouvier , D , Cech , M , Chilton , J , Clements , D , Coraor , N , Gruning , BA , Guerler , A , Hillman-Jackson , J , Hiltemann , S , Jalili , V , Rasche , H , Soranzo , N , Goecks , J , Taylor , J , Nekrutenko , A & Blankenberg , D 2018 , ' The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update ' , Nucleic Acids ....

مصطلحات موضوعية: /dk/atira/pure/keywords/researchprograms/AFL001000/EMCOR01, name=EMC OR-01

وصف الملف: application/pdf

الاتاحة: https://pure.eur.nl/en/publications/f80a9f5b-9d7b-407f-b849-ebe5e31ef6dc
https://doi.org/10.1093/nar/gky379
https://pure.eur.nl/ws/files/47931767/RePub-114438-OA.pdf
http://hdl.handle.net/1765/114438

المؤلفون: Blankenberg, D., Coraor, N., Von Kuster, G., Taylor, J., Nekrutenko, A.

المصدر: Database ; volume 2011, issue 0, page bar011-bar011 ; ISSN 1758-0463

الاتاحة: http://dx.doi.org/10.1093/database/bar011
http://academic.oup.com/database/article-pdf/doi/10.1093/database/bar011/1257656/bar011.pdf

المؤلفون: Ostrovsky, A, Hillman-Jackson, J, Bouvier, D, Clements, D, Afgan, E, Blankenberg, D, Schatz, MC, Nekrutenko, A, Taylor, J, Team, TG, Lariviere, D

مصطلحات موضوعية: computational biology

Relation: Ostrovsky, A, Hillman-Jackson, J, Bouvier, D, Clements, D, Afgan, E, Blankenberg, D, Schatz, MC, Nekrutenko, A, Taylor, J, Team, TG, Lariviere, D (February 2021) Using Galaxy to Perform Large-Scale Interactive Data Analyses—An Update. Current Protocols, 1 (2). ISSN 2691-1299

الاتاحة: http://repository.cshl.edu/id/eprint/40057/
https://doi.org/10.1002/cpz1.31

المؤلفون: Dale, R, Gruning, B, Sjodin, A, Rowe, J, Chapman, B, Tomkins-Tinch, C, Valieris, R, Batut, B, Caprez, A, Cokelaer, T, Yusuf, D, Beauchamp, K, Brinda, K, Wollmann, T, Corguille, G, Ryan, D, Bretaudeau, A, Hoogstrate, Y, Pedersen, B, Heeringen, S, Raden, M, Luna-Valero, S, Soranzo, N, Smet, M, Kuster, G, Kirchner, R, Pantano, L, Charlop-Powers, Z, Thornton, K, Martin, M, Beek, M, Maticzka, D, Miladi, M, Will, S, Gravouil, K, Unneberg, P, Brueffer, C, Blank, C, Piro, V, Wolff, J, Antao, T, Gladman, S, Shlyakhter, I, Hollander, M, Mabon, P, Shen, W, Boekel, J, Holtgrewe, M, Bouvier, D, de Ruiter, J, Cabral, J, Choudhary, S, Harding, N, Kleinkauf, R, Enns, E, Eggenhofer, F, Brown, J, Cock, P, Timm, H, Thomas, C, Zhang, X, Chambers, M, Turaga, N, Seiler, E, Brislawn, C, Pruesse, E, Fallmann, J, Kelleher, J, Nguyen, H, Parsons, L, Fang, Z, Stovner, E, Stoler, N, Ye, S, Wohlers, I, Farouni, R, Freeberg, M, Johnson, J, Bargull, M, Kensche, P, Webster, T, Eppley, J, Stahl, C, Rose, A, Reynolds, A, Wang, L, Garnier, X, Dirmeier, S, Knudsen, M, Taylor, J, Srivastava, A, Rai, V, Agren, R, Junge, A, Guimera, R, Khan, A, Schmeier, S, He, G, Pinello, L, Hagglund, E, Mikheyev, A, Preussner, J, Waters, N, Li, W, Capellades, J, Chande, A, Pirola, Y, Hiltemann, S, Bendall, M, Singh, S, Dunn, W, Drouin, A, Domenico, T, Bruijn, I, Larson, D, Chicco, D, Grassi, E, Gonnella, G, B, J, Giacomoni, F, Clarke, E, Blankenberg, D, Tran, C, Patro, R, Laurent, S, Gopez, M, Sennblad, B, Baaijens, J, Ewels, P, Wright, P, Enache, O, Roger, P, Dampier, W, Koppstein, D, Devisetty, U, Rausch, T, Cornwell, M, Salatino, A, Seiler, J, Jung, M, Kornobis, E, Cumbo, F, Stocker, B, Moskalenko, O, Bogema, D, Workentine, M, Newhouse, S, Leprevost, F, Arvai, K, Koster, J, Dale R., Gruning B., Sjodin A., Rowe J., Chapman B. A., Tomkins-Tinch C. H., Valieris R., Batut B., Caprez A., Cokelaer T., Yusuf D., Beauchamp K. A., Brinda K., Wollmann T., Corguille G. L., Ryan D., Bretaudeau A., Hoogstrate Y., Pedersen B. S., Heeringen S., Raden M., Luna-Valero S., Soranzo N., Smet M. D., Kuster G. V., Kirchner R., Pantano L., Charlop-Powers Z., Thornton K., Martin M., Beek M. D., Maticzka D., Miladi M., Will S., Gravouil K., Unneberg P., Brueffer C., Blank C., Piro V. C., Wolff J., Antao T., Gladman S., Shlyakhter I., Hollander M., Mabon P., Shen W., Boekel J., Holtgrewe M., Bouvier D., de Ruiter J. R., Cabral J., Choudhary S., Harding N., Kleinkauf R., Enns E., Eggenhofer F., Brown J., Cock P. J. A., Timm H., Thomas C., Zhang X. -O., Chambers M., Turaga N., Seiler E., Brislawn C., Pruesse E., Fallmann J., Kelleher J., Nguyen H., Parsons L., Fang Z., Stovner E. B., Stoler N., Ye S., Wohlers I., Farouni R., Freeberg M., Johnson J. E., Bargull M., Kensche P. R., Webster T. H., Eppley J. M., Stahl C., Rose A. S., Reynolds A., Wang L. -B., Garnier X., Dirmeier S., Knudsen M., Taylor J., Srivastava A., Rai V., Agren R., Junge A., Guimera R. V., Khan A., Schmeier S., He G., Pinello L., Hagglund E., Mikheyev A. S., Preussner J., Waters N. R., Li W., Capellades J., Chande A. T., Pirola Y., Hiltemann S., Bendall M. L., Singh S., Dunn W. A., Drouin A., Domenico T. D., Bruijn I., Larson D. E., Chicco D., Grassi E., Gonnella G., B J., Wang L., Giacomoni F., Clarke E., Blankenberg D., Tran C., Patro R., Laurent S., Gopez M., Sennblad B., Baaijens J. A., Ewels P., Wright P. R., Enache O. M., Roger P., Dampier W., Koppstein D., Devisetty U. K., Rausch T., Cornwell M., Salatino A. E., Seiler J., Jung M., Kornobis E., Cumbo F., Stocker B. K., Moskalenko O., Bogema D. R., Workentine M. L., Newhouse S. J., Leprevost F. D. V., Arvai K., Koster J.

مصطلحات الفهرس: Computational Biology, User-Computer Interface, Software, INF/01 - INFORMATICA, info:eu-repo/semantics/article

URL: http://hdl.handle.net/10281/265942
info:eu-repo/semantics/altIdentifier/pmid/29967506
info:eu-repo/semantics/altIdentifier/wos/WOS:000437934800003
volume:15
issue:7
firstpage:475
lastpage:476
numberofpages:2
journal:NATURE METHODS

المؤلفون: Dale R., Gruning B., Sjodin A., Rowe J., Chapman B. A., Tomkins-Tinch C. H., Valieris R., Batut B., Caprez A., Cokelaer T., Yusuf D., Beauchamp K. A., Brinda K., Wollmann T., Corguille G. L., Ryan D., Bretaudeau A., Hoogstrate Y., Pedersen B. S., Heeringen S., Raden M., Luna-Valero S., Soranzo N., Smet M. D., Kuster G. V., Kirchner R., Pantano L., Charlop-Powers Z., Thornton K., Martin M., Beek M. D., Maticzka D., Miladi M., Will S., Gravouil K., Unneberg P., Brueffer C., Blank C., Piro V. C., Wolff J., Antao T., Gladman S., Shlyakhter I., Hollander M., Mabon P., Shen W., Boekel J., Holtgrewe M., Bouvier D., de Ruiter J. R., Cabral J., Choudhary S., Harding N., Kleinkauf R., Enns E., Eggenhofer F., Brown J., Cock P. J. A., Timm H., Thomas C., Zhang X. -O., Chambers M., Turaga N., Seiler E., Brislawn C., Pruesse E., Fallmann J., Kelleher J., Nguyen H., Parsons L., Fang Z., Stovner E. B., Stoler N., Ye S., Wohlers I., Farouni R., Freeberg M., Johnson J. E., Bargull M., Kensche P. R., Webster T. H., Eppley J. M., Stahl C., Rose A. S., Reynolds A., Wang L. -B., Garnier X., Dirmeier S., Knudsen M., Taylor J., Srivastava A., Rai V., Agren R., Junge A., Guimera R. V., Khan A., Schmeier S., He G., Pinello L., Hagglund E., Mikheyev A. S., Preussner J., Waters N. R., Li W., Capellades J., Chande A. T., Pirola Y., Hiltemann S., Bendall M. L., Singh S., Dunn W. A., Drouin A., Domenico T. D., Bruijn I., Larson D. E., Chicco D., Grassi E., Gonnella G., B J., Wang L., Giacomoni F., Clarke E., Blankenberg D., Tran C., Patro R., Laurent S., Gopez M., Sennblad B., Baaijens J. A., Ewels P., Wright P. R., Enache O. M., Roger P., Dampier W., Koppstein D., Devisetty U. K., Rausch T., Cornwell M., Salatino A. E., Seiler J., Jung M., Kornobis E., Cumbo F., Stocker B. K., Moskalenko O., Bogema D. R., Workentine M. L., Newhouse S. J., Leprevost F. D. V., Arvai K., Koster J.

المساهمون: Albert-Ludwigs-Universität Freiburg, National Institutes of Health [Bethesda] (NIH), Swedish Defence Research Agency [Stockholm] (FOI), Umeå University, Harvard T.H. Chan School of Public Health, New York University [Abu Dhabi], NYU System (NYU), Harvard University [Cambridge], Hospital Camargo Sao Paulo, Partenaires INRAE, University of Duisburg-Essen, This work was supported by the Intramural Program of the National Institute of Diabetes and Digestive and Kidney Diseases, US National Institutes of Health (R.D.), the Netherlands Organisation for Scientific Research (NWO) (VENI grant 016.Veni.173.076 to J.K.), the German Research Foundation (SFB 876 to J.K.), and the NYU Abu Dhabi Research Institute for the NYU Abu Dhabi Center for Genomics and Systems Biology, program number CGSB1 (grant to J.R. and A. Yousif)., We thank all contributors, the conda-forge team, and Anaconda Inc. for excellent cooperation. Further, we thank Travis CI (https://travis-ci.com) and Circle CI (https://circleci.com) for providing free Linux and macOS computing capacity. Finally, we thank ELIXIR (https://www.elixir-europe.org) for constant support and donation of staff., Etienne Kornobis (Epigenetic Regulation Unit, Institut Pasteur, Paris, France) fait partie de Bioconda Team, Bioinformatics Group, Department ​ ​ of ​ ​ Computer ​ ​ Science, University of Freiburg [Freiburg], Laboratory of Cellular and Developmental Biology (LCDB), NIDDK, NIH, Department of Organismic and Evolutionary Biology, Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Microbiologie Environnement Digestif Santé (MEDIS), INRA Clermont-Ferrand-Theix-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), Umea Plant Science Center (UPSC), Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU)-Swedish University of Agricultural Sciences (SLU), Laboratoire Microorganismes : Génome et Environnement (LMGE), Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), Harvard University, Universität Duisburg-Essen = University of Duisburg-Essen [Essen], Dale, R, Gruning, B, Sjodin, A, Rowe, J, Chapman, B, Tomkins-Tinch, C, Valieris, R, Batut, B, Caprez, A, Cokelaer, T, Yusuf, D, Beauchamp, K, Brinda, K, Wollmann, T, Corguille, G, Ryan, D, Bretaudeau, A, Hoogstrate, Y, Pedersen, B, Heeringen, S, Raden, M, Luna-Valero, S, Soranzo, N, Smet, M, Kuster, G, Kirchner, R, Pantano, L, Charlop-Powers, Z, Thornton, K, Martin, M, Beek, M, Maticzka, D, Miladi, M, Will, S, Gravouil, K, Unneberg, P, Brueffer, C, Blank, C, Piro, V, Wolff, J, Antao, T, Gladman, S, Shlyakhter, I, Hollander, M, Mabon, P, Shen, W, Boekel, J, Holtgrewe, M, Bouvier, D, de Ruiter, J, Cabral, J, Choudhary, S, Harding, N, Kleinkauf, R, Enns, E, Eggenhofer, F, Brown, J, Cock, P, Timm, H, Thomas, C, Zhang, X, Chambers, M, Turaga, N, Seiler, E, Brislawn, C, Pruesse, E, Fallmann, J, Kelleher, J, Nguyen, H, Parsons, L, Fang, Z, Stovner, E, Stoler, N, Ye, S, Wohlers, I, Farouni, R, Freeberg, M, Johnson, J, Bargull, M, Kensche, P, Webster, T, Eppley, J, Stahl, C, Rose, A, Reynolds, A, Wang, L, Garnier, X, Dirmeier, S, Knudsen, M, Taylor, J, Srivastava, A, Rai, V, Agren, R, Junge, A, Guimera, R, Khan, A, Schmeier, S, He, G, Pinello, L, Hagglund, E, Mikheyev, A, Preussner, J, Waters, N, Li, W, Capellades, J, Chande, A, Pirola, Y, Hiltemann, S, Bendall, M, Singh, S, Dunn, W, Drouin, A, Domenico, T, Bruijn, I, Larson, D, Chicco, D, Grassi, E, Gonnella, G, B, J, Giacomoni, F, Clarke, E, Blankenberg, D, Tran, C, Patro, R, Laurent, S, Gopez, M, Sennblad, B, Baaijens, J, Ewels, P, Wright, P, Enache, O, Roger, P, Dampier, W, Koppstein, D, Devisetty, U, Rausch, T, Cornwell, M, Salatino, A, Seiler, J, Jung, M, Kornobis, E, Cumbo, F, Stocker, B, Moskalenko, O, Bogema, D, Workentine, M, Newhouse, S, Leprevost, F, Arvai, K, Koster, J, Urology, Pathology

المصدر: Nature Methods
Nature Methods, Nature Publishing Group, 2018, 15 (7), pp.475-476. ⟨10.1038/s41592-018-0046-7⟩
Nature Methods, Nature Publishing Group, 2018, 15 (7), pp.475-476
Nature Methods, 2018, 15 (7), pp.475-476. ⟨10.1038/s41592-018-0046-7⟩
Nature Methods, 15(7), 475-476. Nature Publishing Group

مصطلحات موضوعية: 0301 basic medicine, Computer science, [SDV]Life Sciences [q-bio], Medizin, computer.software_genre, Biochemistry, User-Computer Interface, 03 medical and health sciences, 0302 clinical medicine, Software system, Molecular Biology, ComputingMilieux_MISCELLANEOUS, Social software engineering, Database, business.industry, Software development, INF/01 - INFORMATICA, Computational Biology, Cell Biology, Software distribution, 030104 developmental biology, Software construction, [SDE]Environmental Sciences, Package development process, Backporting, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], business, computer, Software, 030217 neurology & neurosurgery, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::183f2a9d867a8a3bf8cb7ac58bc6740e
https://hal-pasteur.archives-ouvertes.fr/pasteur-02926292

المؤلفون: Coyne, CB, Baker, D, van den Beek, M, Blankenberg, D, Bouvier, D, Chilton, J, Coraor, N, Coppens, F, Eguinoa, I, Gladman, S, Gruening, B, Keener, N, Lariviere, D, Lonie, A, Pond, SK, Maier, W, Nekrutenko, A, Taylor, J, Weaver, S

مصطلحات الفهرس: Journal Article

URL: http://hdl.handle.net/11343/245153

المؤلفون: Afgan, E. (Enis), Baker, D. (Dannon), Batut, B. (Bérénice), Van Den Beek, M. (Marius), Bouvier, D. (Dave), Ech, M. (Martin), Chilton, J. (John), Clements, D. (Dave), Coraor, N. (Nate), Grüning, B.A. (Björn A.), Guerler, A. (Aysam), Hillman-Jackson, J. (Jennifer), Hiltemann, S. (Saskia), Jalili, V. (Vahid), Rasche, H. (Helena), Soranzo, N. (Nicola), Goecks, J. (Jeremy), Taylor, J. (James), Nekrutenko, A. (Anton), Blankenberg, D. (Daniel)

مصطلحات الفهرس: info:eu-repo/semantics/article

URL: http://repub.eur.nl/pub/114438

المؤلفون: Rebolledo Jaramilloa B., Shu Wei M., Stoler N., McElhoec J. A., Dickins B., Blankenberg D, Korneliussen T. S., Nielsen R, Holland M. M, Paul I, Nekrutenko A, Makova K. D., CHIAROMONTE, FRANCESCA

المساهمون: Rebolledo Jaramilloa, B., Shu Wei, M., Stoler, N., Mcelhoec, J. A., Dickins, B., Blankenberg, D, Korneliussen, T. S., Chiaromonte, Francesca, Nielsen, R, Holland, M. M., Paul, I, Nekrutenko, A, Makova, K. D.

Relation: info:eu-repo/semantics/altIdentifier/wos/WOS:000343729500057; firstpage:15474; lastpage:15479; numberofpages:6; journal:PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA; http://hdl.handle.net/11382/506729; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-84908292423

الاتاحة: http://hdl.handle.net/11382/506729

المؤلفون: Dickins, B, Rebolledo-Jaramillo, B, Su, MS-W, Paul, IM, Blankenberg, D, Stoler, N, Makova, KD, Nekrutenko, A

وصف الملف: text

Relation: https://irep.ntu.ac.uk/id/eprint/26987/1/26987_Dickins.pdf; DICKINS, B., REBOLLEDO-JARAMILLO, B., SU, M.S.-W., PAUL, I.M., BLANKENBERG, D., STOLER, N., MAKOVA, K.D. and NEKRUTENKO, A., 2014. Controlling for contamination in re-sequencing studies with a reproducible web-based phylogenetic approach. BioTechniques, 56 (3), pp. 134-141. ISSN 0736-6205

الاتاحة: http://irep.ntu.ac.uk/id/eprint/26987/
https://irep.ntu.ac.uk/id/eprint/26987/1/26987_Dickins.pdf
https://doi.org/10.2144/000114146

المؤلفون: Rebolledo-Jaramillo, B, Su, MS-W, Stoler, N, McElhoe, JA, Dickins, B, Blankenberg, D, Korneliussen, TS, Chiaromonte, F, Nielsen, R, Holland, MM, Paul, IM, Nekrutenko, A, Makova, KD

وصف الملف: text

Relation: http://irep.ntu.ac.uk/id/eprint/26150/1/PubSub3639_Dickens.pdf; REBOLLEDO-JARAMILLO, B., SU, M.S.-W., STOLER, N., MCELHOE, J.A., DICKINS, B., BLANKENBERG, D., KORNELIUSSEN, T.S., CHIAROMONTE, F., NIELSEN, R., HOLLAND, M.M., PAUL, I.M., NEKRUTENKO, A. and MAKOVA, K.D., 2014. Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America, 111 (43), pp. 15474-15479. ISSN 1091-6490

الاتاحة: http://irep.ntu.ac.uk/id/eprint/26150/
http://irep.ntu.ac.uk/id/eprint/26150/1/PubSub3639_Dickens.pdf
https://doi.org/10.1073/pnas.1409328111

المؤلفون: Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E., Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F., Adams, L. B.

مصطلحات موضوعية: bioinformatics, genomics and proteomics, animal, mouse

وصف الملف: application/pdf

Relation: http://repository.cshl.edu/id/eprint/27053/1/Gingeras%20Genome%20Biology%202012.pdf; Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E., Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F., Adams, L. B. (August 2012) An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biology, 13 (8).

الاتاحة: http://repository.cshl.edu/id/eprint/27053/
http://repository.cshl.edu/id/eprint/27053/1/Gingeras%20Genome%20Biology%202012.pdf
http://www.ncbi.nlm.nih.gov/pubmed/22889292
https://doi.org/10.1186/gb-2012-13-8-418

المؤلفون: Miller, W., Rosenbloom, K., Hardison, R. C., Hou, M., Taylor, J., Raney, B., Burhans, R., King, D. C., Baertsch, R., Blankenberg, D., Kosakovsky Pond, S. L., Nekrutenko, A., Giardine, B., Harris, R. S., Tyekucheva, S., Diekhans, M., Pringle, T. H., Murphy, W. J., Lesk, A., Weinstock, G. M., Lindblad-Toh, K., Gibbs, R. A., Lander, E. S., Siepel, A., Haussler, D., Kent, W. J.

مصطلحات موضوعية: bioinformatics, genomics and proteomics, sequence alignment

وصف الملف: application/pdf

Relation: http://repository.cshl.edu/id/eprint/31083/1/Siepel%20Genome%20Research%202007c.pdf; Miller, W., Rosenbloom, K., Hardison, R. C., Hou, M., Taylor, J., Raney, B., Burhans, R., King, D. C., Baertsch, R., Blankenberg, D., Kosakovsky Pond, S. L., Nekrutenko, A., Giardine, B., Harris, R. S., Tyekucheva, S., Diekhans, M., Pringle, T. H., Murphy, W. J., Lesk, A., Weinstock, G. M., Lindblad-Toh, K., Gibbs, R. A., Lander, E. S., Siepel, A., Haussler, D., Kent, W. J. (December 2007) 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Research, 17 (12). pp. 1797-808. ISSN 1088-9051

الاتاحة: http://repository.cshl.edu/id/eprint/31083/
http://repository.cshl.edu/id/eprint/31083/1/Siepel%20Genome%20Research%202007c.pdf
http://www.ncbi.nlm.nih.gov/pubmed/17984227
https://doi.org/10.1101/gr.6761107