المؤلفون: Heaton, Michael P, Smith, Timothy PL, Bickhart, Derek M, Vander Ley, Brian L, Kuehn, Larry A, Oppenheimer, Jonas, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Rosen, Benjamin D

المصدر: Journal of Heredity. 112(2)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Animals, Bison, Cattle, Chromosome Mapping, Female, Genome, Haplotypes, Male, Fleckvieh, bison, F1 hybrid, pangenome, nanopore, trio binning, Evolutionary Biology, Evolutionary biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5kj1x15s
https://escholarship.org/content/qt5kj1x15s/qt5kj1x15s.pdf

المؤلفون: Oppenheimer, Jonas, Rosen, Benjamin D, Heaton, Michael P, Vander Ley, Brian L, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, Kuehn, Larry A, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Bickhart, Derek M, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Smith, Timothy PL

المصدر: Journal of Heredity. 112(2)

مصطلحات موضوعية: Biological Sciences, Genetics, Human Genome, Generic health relevance, Life on Land, Animals, Bison, Cattle, Chromosome Mapping, Female, Genetic Variation, Genome, Haplotypes, Hybridization, Genetic, Male, bovine, interspecies hybrid, nanopore sequencing, trio binning, Genome resources, Evolutionary Biology, Evolutionary biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/1w5635sm
https://escholarship.org/content/qt1w5635sm/qt1w5635sm.pdf

المؤلفون: Rosen, Benjamin D, Bickhart, Derek M, Schnabel, Robert D, Koren, Sergey, Elsik, Christine G, Tseng, Elizabeth, Rowan, Troy N, Low, Wai Y, Zimin, Aleksey, Couldrey, Christine, Hall, Richard, Li, Wenli, Rhie, Arang, Ghurye, Jay, McKay, Stephanie D, Thibaud-Nissen, Françoise, Hoffman, Jinna, Murdoch, Brenda M, Snelling, Warren M, McDaneld, Tara G, Hammond, John A, Schwartz, John C, Nandolo, Wilson, Hagen, Darren E, Dreischer, Christian, Schultheiss, Sebastian J, Schroeder, Steven G, Phillippy, Adam M, Cole, John B, Van Tassell, Curtis P, Liu, George, Smith, Timothy PL, Medrano, Juan F

المصدر: GigaScience. 9(3)

مصطلحات موضوعية: Animals, Cattle, Sequence Analysis, DNA, Breeding, Genomics, Polymorphism, Genetic, Genome, Reference Standards, RNA-Seq, Hereford, bovine genome, cattle, reference assembly, Human Genome, Biotechnology, Genetics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4bk7b7vn

المؤلفون: Smith, Timothy, P L, Bickhart, Derek, M, Boichard, Didier, Chamberlain, Amanda, J, Djikeng, Appolinaire, Jiang, Yu, Low, Wai, Y, Pausch, Hubert, Demyda-Peyrás, Sebastian, Prendergast, James, Schnabel, Robert, D, Rosen, Benjamin, D

المساهمون: United States Department of Agriculture (USDA), Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Agriculture Victoria Research, Centre for Tropical Livestock Genetics and Health Edimburgh (CTLGH), Danmarks Tekniske Universitet = Technical University of Denmark (DTU), University of Adelaide, Animal Genomics, Universidad Nacional de la Plata Argentine (UNLP), University of Edinburgh (Edin.), University of Missouri Columbia (Mizzou), University of Missouri System, USDA Agricultural Research Service Beltsville, Maryland, USDA-ARS : Agricultural Research Service, USDA, ARS appropriated project 3040-31000-100-00D to TPLS, USDA, ARS appropriated project 5090-31000-026-00D to DMB, USDA, ARS appropriated project 8042-31000-001-00D to BDR.

المصدر: ISSN: 1465-6906.

مصطلحات موضوعية: [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics

Relation: info:eu-repo/semantics/altIdentifier/pmid/37337218; PUBMED: 37337218; PUBMEDCENTRAL: PMC10278262; WOS: 001015106300001

الاتاحة: https://hal.inrae.fr/hal-04136901
https://hal.inrae.fr/hal-04136901v1/document
https://hal.inrae.fr/hal-04136901v1/file/Smith2023_GenomeBiology.pdf
https://doi.org/10.1186/s13059-023-02975-0

المؤلفون: Smith, Timothy P. L., Bickhart, Derek M., Boichard, Didier, Chamberlain, Amanda J., Djikeng, Appolinaire, Jiang, Yu, Low, Wai Y., Pausch, Hubert, Demyda-Peyrás, S., Prendergast, James, Schnabel, Robert D., Rosen, Benjamin D., Bovine Pangenome Consortium

المصدر: Smith, T. P. L., Bickhart, D. M., Boichard, D., Chamberlain, A. J., Djikeng, A., Jiang, Y., Low, W. Y., Pausch, H., Demyda-Peyrás, S., Prendergast, J., Schnabel, R. D., & Rosen, B. D. (2023). The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-02975-0

مصطلحات موضوعية: Cattle breeds, Bovine species, Genomics, Bovine Pangenome Consortium

وصف الملف: application/pdf

Relation: https://doi.org/10.1186/s13059-023-02975-0; http://hdl.handle.net/10396/27761

الاتاحة: http://hdl.handle.net/10396/27761

المؤلفون: Smith, Timothy P.L., Bickhart, Derek M., Boichard, Didier, Chamberlain, Amanda J., Djikeng, Appolinaire, Jiang, Yu, Low, Wai Y., Pausch, Hubert, id_orcid:0 000-0002-0501-6760, Demyda-Peyrás, Sebastian, Prendergast, James, Schnabel, Robert D., Rosen, Benjamin D., Bovine Pangenome Consortium

المصدر: Genome Biology, 24 (1)

وصف الملف: application/application/pdf

Relation: info:eu-repo/semantics/altIdentifier/wos/001015106300001; http://hdl.handle.net/20.500.11850/617524

الاتاحة: https://hdl.handle.net/20.500.11850/617524
https://doi.org/10.3929/ethz-b-000617524

المؤلفون: Schwartz, John C, Gibson, Mark S, Heimeier, Dorothea, Koren, Sergey, Phillippy, Adam M, Bickhart, Derek M, Smith, Timothy PL, Medrano, Juan F, Hammond, John A

المصدر: Immunogenetics. 69(4)

مصطلحات موضوعية: Biomedical and Clinical Sciences, Immunology, Biotechnology, Vaccine Related, Genetics, 1.1 Normal biological development and functioning, Underpinning research, Generic health relevance, Animals, Evolution, Molecular, Genome, Humans, Killer Cells, Natural, Lectins, C-Type, Mammals, Molecular Sequence Annotation, Phylogeny, Polymorphism, Genetic, Receptors, Natural Killer Cell, Selection, Genetic, Sequence Analysis, DNA, Natural killer cells, C-type lectin, Natural killer complex, Leukocyte receptor complex, KLRA, KLRC

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/74v7t5kz
https://escholarship.org/content/qt74v7t5kz/qt74v7t5kz.pdf

المؤلفون: Skarlupka, Joseph H., Cox, Madison S., Steinberger, Andrew J., Sbardellati, Dino L., McClure, Jennifer C., Bickhart, Derek M., Scheftgen, Andrew J., Zuniga-Chaves, Ibrahim, Wolfe, Luke A., Paget, Eric, Skadron, Charles, Attipetty, Nithya, Suen, Garret

المصدر: Frontiers in Microbiology; 2024, p1-12, 12p

مصطلحات موضوعية: DAIRY cattle, BACTERIAL communities, MICROBIAL communities, GASTROINTESTINAL contents, BACTERIAL diversity, FUNGAL communities

المؤلفون: Bickhart, Derek M, Xu, Lingyang, Hutchison, Jana L, Cole, John B, Null, Daniel J, Schroeder, Steven G, Song, Jiuzhou, Garcia, Jose Fernando, Sonstegard, Tad S, Van Tassell, Curtis P, Schnabel, Robert D, Taylor, Jeremy F, Lewin, Harris A, Liu, George E

المصدر: DNA Research. 23(3)

مصطلحات موضوعية: Biological Sciences, Genetics, Human Genome, Biotechnology, Animals, Breeding, Cattle, DNA Copy Number Variations, Gene Duplication, Genome, Multigene Family, Polymorphism, Genetic, cattle genome, population sequencing, copy number variation, taurine, indicine, Plant Biology & Botany

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9x66g0vv

المؤلفون: Leonard, Alexander S, Crysnanto, Danang, Fang, Zih-Hua, Heaton, Michael P, Vander Ley, Brian L, Herrera, Carolina, Bollwein, Heinrich, Bickhart, Derek M, Kuhn, Kristen L, Smith, Timothy P L, Rosen, Benjamin D, Pausch, Hubert

المصدر: Leonard, Alexander S; Crysnanto, Danang; Fang, Zih-Hua; Heaton, Michael P; Vander Ley, Brian L; Herrera, Carolina; Bollwein, Heinrich; Bickhart, Derek M; Kuhn, Kristen L; Smith, Timothy P L; Rosen, Benjamin D; Pausch, Hubert (2022). Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies. Nature Communications, 13(1):3012.

مصطلحات موضوعية: Department of Farm Animals, 570 Life sciences, biology, General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Multidisciplinary

وصف الملف: application/pdf

Relation: https://www.zora.uzh.ch/id/eprint/228274/1/ZORA_s41467_022_30680_2.pdf; info:pmid/35641504; urn:issn:2041-1723

الاتاحة: https://www.zora.uzh.ch/id/eprint/228274/
https://www.zora.uzh.ch/id/eprint/228274/1/ZORA_s41467_022_30680_2.pdf

المؤلفون: Leonard, Alexander, id_orcid:0 000-0001-8425-5630, Crysnanto, Danang, id_orcid:0 000-0003-4444-9371, Fang, Zih-Hua, id_orcid:0 000-0002-0225-8772, Heaton, Michael P., Vander Ley, Brian L., Herrera, Carolina, Bollwein, Heinrich, Bickhart, Derek M., Kuhn, Kristen L., Smith, Timothy P. L., Rosen, Benjamin D., Pausch, Hubert, id_orcid:0 000-0002-0501-6760

المصدر: Nature Communications, 13 (1)

وصف الملف: application/application/pdf

Relation: info:eu-repo/semantics/altIdentifier/wos/000804197600009; info:eu-repo/grantAgreement/SNF/Projekte Lebenswissenschaften/185229; http://hdl.handle.net/20.500.11850/551513

الاتاحة: https://hdl.handle.net/20.500.11850/551513
https://doi.org/10.3929/ethz-b-000551513

المؤلفون: Leonard, Alexander S., Crysnanto, Danang, Fang, Zih-Hua, Heaton, Michael P., Vander Ley, Brian L., Herrera, Carolina, Bollwein, Heinrich, Bickhart, Derek M., Kuhn, Kristen L., Smith, Timothy P. L., Rosen, Benjamin D., Pausch, Hubert

المساهمون: Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung

المصدر: Nature Communications ; volume 13, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-022-30680-2
https://www.nature.com/articles/s41467-022-30680-2.pdf
https://www.nature.com/articles/s41467-022-30680-2

المؤلفون: Low, Wai Yee, Rosen, Benjamin D., Ren, Yan, Bickhart, Derek M., To, Thu-Hien, Martin, Fergal J., Billis, Konstantinos, Sonstegard, Tad S., Sullivan, Shawn T., Hiendleder, Stefan, Williams, John L., Heaton, Michael P., Smith, Timothy P. L.

المصدر: BMC Genomics ; volume 23, issue 1 ; ISSN 1471-2164

الاتاحة: http://dx.doi.org/10.1186/s12864-022-08561-1
https://link.springer.com/content/pdf/10.1186/s12864-022-08561-1.pdf
https://link.springer.com/article/10.1186/s12864-022-08561-1/fulltext.html

المؤلفون: Davenport, Kimberly M, Bickhart, Derek M, Worley, Kim, Murali, Shwetha C, Salavati, Mazdak, Clark, Emily L, Cockett, Noelle E, Heaton, Michael P, Smith, Timothy P L, Murdoch, Brenda M, Rosen, Benjamin D

المساهمون: U.S. Department of Agriculture, National Institute of Food and Agriculture, National Institutes of Health

المصدر: GigaScience ; volume 11 ; ISSN 2047-217X

الاتاحة: https://doi.org/10.1093/gigascience/giab096
https://academic.oup.com/gigascience/article-pdf/doi/10.1093/gigascience/giab096/60691576/giab096.pdf

المؤلفون: Heaton, Michael P, Smith, Timothy P L, Bickhart, Derek M, Vander Ley, Brian L, Kuehn, Larry A, Oppenheimer, Jonas, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Rosen, Benjamin D

المساهمون: U.S. Department of Agriculture, Agricultural Research Service, Nebraska Beef Industry Endowment, National Institutes of Health, National Science Foundation, American Simmental Association

المصدر: Journal of Heredity ; volume 112, issue 6, page 565-565 ; ISSN 0022-1503 1465-7333

مصطلحات موضوعية: Genetics (clinical), Genetics, Molecular Biology, Biotechnology

الاتاحة: http://dx.doi.org/10.1093/jhered/esab039
http://academic.oup.com/jhered/advance-article-pdf/doi/10.1093/jhered/esab039/39956317/esab039.pdf
http://academic.oup.com/jhered/article-pdf/112/6/565/41029135/esab039.pdf

المؤلفون: Normand, Philippe, Lapierre, Pascal, Tisa, Louis S., Gogarten, J. Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A., Berry, Alison, Bickhart, Derek M., Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, M. Pilar, Ggoltsman, Eugene, Huang, Ying, Kopp, Olga, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E., Mullin, Beth, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P., Vallenet, David, Valverde, Claudio, Wall, Luis, Wang, Ying, Medigue, Claudine, Benson, David R.

مصطلحات موضوعية: Basic biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5cx8v80b

المؤلفون: Liu, Shuli, Kang, Xiaolong, Catacchio, Claudia R., Liu, Mei, Fang, Lingzhao, Schroeder, Steven G., Li, Wenli, Rosen, Benjamin D., Iamartino, Daniela, Iannuzzi, Leopoldo, Sonstegard, Tad S., Van Tassell, Curtis P., Ventura, Mario, Low, Wai Yee, Williams, John L., Bickhart, Derek M., Liu, George E.

المساهمون: Liu, Shuli, Kang, Xiaolong, Catacchio, Claudia R., Liu, Mei, Fang, Lingzhao, Schroeder, Steven G., Li, Wenli, Rosen, Benjamin D., Iamartino, Daniela, Iannuzzi, Leopoldo, Sonstegard, Tad S., Van Tassell, Curtis P., Ventura, Mario, Low, Wai Yee, Williams, John L., Bickhart, Derek M., Liu, George E.

مصطلحات موضوعية: Array Comparative Genomic Hybridization, Bubalus bubali, Copy number variation, Fluorescent in situ hybridization, Quantitative PCR, Segmental duplication

Relation: info:eu-repo/semantics/altIdentifier/pmid/30734132; info:eu-repo/semantics/altIdentifier/wos/WOS:000464850100003; volume:19; issue:3; firstpage:409; lastpage:419; journal:FUNCTIONAL & INTEGRATIVE GENOMICS; http://hdl.handle.net/11586/227168; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85061332328

الاتاحة: http://hdl.handle.net/11586/227168
https://doi.org/10.1007/s10142-019-00657-4

المؤلفون: Low, Wai-Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M, Rosen, Benjamin D, Kronenberg, Zev N, Kinggan, Sarah B, Tseng, Elizabeth, Thibaud-Nissen, Francoise, Martin, Fergal J, Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R, Lee, Joyce, Pang, Andy W C, Heaton, Michael P, Phillipy, Adam M, Hiendleder, Stefan, Smith, Timothy P L, Williams, John L

مصطلحات موضوعية: Iso-Seq, PacBio, Full-Length Transcriptome, Long reads

Relation: https://doi.org/10.1038/s41467-020-15848-y; https://doi.org/10.5281/zenodo.4279691; https://doi.org/10.5281/zenodo.4279692; oai:zenodo.org:4279692

الاتاحة: https://doi.org/10.5281/zenodo.4279692

المؤلفون: Warr, Amanda, Affara, Nabeel, Aken, Bronwen, Beiki, Hamid, Bickhart, Derek M, Billis, Konstantinos, Chow, William, Eory, Lel, Finlayson, Heather A, Flicek, Paul, Girón, Carlos G, Griffin, Darren K, Hall, Richard, Hannum, Greg, Hourlier, Thibaut, Howe, Kerstin, Hume, David A, Izuogu, Osagie, Kim, Kristi, Koren, Sergey, Liu, Haibou, Manchanda, Nancy, Martin, Fergal J, Nonneman, Dan J, O'Connor, Rebecca E, Phillippy, Adam M, Rohrer, Gary A, Rosen, Benjamin D, Rund, Laurie A, Sargent, Carole A, Schook, Lawrence B, Schroeder, Steven G, Schwartz, Ariel S, Skinner, Ben M, Talbot, Richard, Tseng, Elizabeth, Tuggle, Christopher K, Watson, Mick, Smith, Timothy PL, Archibald, Alan L

وصف الملف: text

Relation: http://repository.essex.ac.uk/28033/1/giaa051.pdf; Warr, Amanda and Affara, Nabeel and Aken, Bronwen and Beiki, Hamid and Bickhart, Derek M and Billis, Konstantinos and Chow, William and Eory, Lel and Finlayson, Heather A and Flicek, Paul and Girón, Carlos G and Griffin, Darren K and Hall, Richard and Hannum, Greg and Hourlier, Thibaut and Howe, Kerstin and Hume, David A and Izuogu, Osagie and Kim, Kristi and Koren, Sergey and Liu, Haibou and Manchanda, Nancy and Martin, Fergal J and Nonneman, Dan J and O'Connor, Rebecca E and Phillippy, Adam M and Rohrer, Gary A and Rosen, Benjamin D and Rund, Laurie A and Sargent, Carole A and Schook, Lawrence B and Schroeder, Steven G and Schwartz, Ariel S and Skinner, Ben M and Talbot, Richard and Tseng, Elizabeth and Tuggle, Christopher K and Watson, Mick and Smith, Timothy PL and Archibald, Alan L (2020) 'An improved pig reference genome sequence to enable pig genetics and genomics research.' GigaScience, 9 (6). giaa051-. ISSN 2047-217X

الاتاحة: http://repository.essex.ac.uk/28033/
https://doi.org/10.1093/gigascience/giaa051
http://repository.essex.ac.uk/28033/1/giaa051.pdf

المؤلفون: Archibald, Alan L, Smith, Timothy P L, Watson, Mick, Tuggle, Christopher K, Tseng, Elizabeth, Talbot, Richard, Skinner, Ben M, Schwartz, Ariel S, Schroeder, Steven G, Schook, Lawrence B, Sargent, Carole A, Rund, Laurie A, Rosen, Benjamin D, Rohrer, Gary A, Phillippy, Adam M, O'Connor, Rebecca, Nonneman, Dan J, Martin, Fergal J, Manchanda, Nancy, Liu, Haibou, Koren, Sergey, Kim, Kristi, Izuogu, Osagie, Hume, David A, Howe, Kerstin, Hourlier, Thibaut, Hannum, Greg, Hall, Richard, Griffin, Darren K., Girón, Carlos G, Flicek, Paul, Finlayson, Heather A, Eory, Lel, Chow, William, Billis, Konstantinos, Bickhart, Derek M, Beiki, Hamid, Aken, Bronwen, Affara, Nabeel, Warr, Amanda

مصطلحات موضوعية: Q Science

وصف الملف: application/pdf

Relation: https://kar.kent.ac.uk/81763/1/Warr%20et%20al%202020%20Gigascience%209,%20giaa051.pdf; Archibald, Alan L, Smith, Timothy P L, Watson, Mick, Tuggle, Christopher K, Tseng, Elizabeth, Talbot, Richard, Skinner, Ben M, Schwartz, Ariel S, Schroeder, Steven G, Schook, Lawrence B, and others. Sargent, Carole A, Rund, Laurie A, Rosen, Benjamin D, Rohrer, Gary A, Phillippy, Adam M, O'Connor, Rebecca, Nonneman, Dan J, Martin, Fergal J, Manchanda, Nancy, Liu, Haibou, Koren, Sergey, Kim, Kristi, Izuogu, Osagie, Hume, David A, Howe, Kerstin, Hourlier, Thibaut, Hannum, Greg, Hall, Richard, Griffin, Darren K., Girón, Carlos G, Flicek, Paul, Finlayson, Heather A, Eory, Lel, Chow, William, Billis, Konstantinos, Bickhart, Derek M, Beiki, Hamid, Aken, Bronwen, Affara, Nabeel, and Warr, Amanda (hide) (2020) An improved pig reference genome sequence to enable pig genetics and genomics research. GigaScience, 9 (6). ISSN 2047-217X. (doi:10.1093/gigascience/giaa051 ) (KAR id:81763 )

الاتاحة: https://kar.kent.ac.uk/81763/
https://kar.kent.ac.uk/81763/1/Warr%20et%20al%202020%20Gigascience%209,%20giaa051.pdf
https://doi.org/10.1093/gigascience%2Fgiaa051