المؤلفون: Carmelo Andújar, Paula Arribas, Michal Motyka, Mathew Bocek, Ladislav Bocak, Benjamin Linard, Alfried P. Vogler

المصدر: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 2, Pp 2447-2450 (2019)

مصطلحات موضوعية: coleoptera, endogean, soil, mitochondrial metagenomics, next-generation sequencing, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2380-2359

URL الوصول: https://doaj.org/article/ccbf2b4294d94aa98891f15c8dc53180

المؤلفون: Benjamin Linard, Ngoc Hoan Nguyen, Francisco Prosdocimi, Olivier Poch, Julie D. Thompson

المصدر: Evolutionary Bioinformatics, Vol 2012, Iss 8, Pp 61-77 (2011)

مصطلحات موضوعية: Evolution, QH359-425

وصف الملف: electronic resource

Relation: http://www.la-press.com/evolucode-evolutionary-barcodes-as-a-unifying-framework-for-multilevel-a2964; https://doaj.org/toc/1176-9343

URL الوصول: https://doaj.org/article/37d36c39a92f40908009650c6d4bf9e9

المؤلفون: Débora P Paula, Benjamin Linard, Alex Crampton-Platt, Amrita Srivathsan, Martijn J T N Timmermans, Edison R Sujii, Carmen S S Pires, Lucas M Souza, David A Andow, Alfried P Vogler

المصدر: PLoS ONE, Vol 11, Iss 9, p e0161841 (2016)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC5021305?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/79627d2c2a9948e28ef0d3a3f22421ec

المؤلفون: Benjamin Linard, Ngoc Hoan Nguyen, Francisco Prosdocimi, Olivier Poch, Julie D. Thompson

المصدر: Evolutionary Bioinformatics, Vol 8 (2012)

مصطلحات موضوعية: Evolution, QH359-425

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1176-9343

URL الوصول: https://doaj.org/article/0b6aa8bf2a50496591687f88237ce945

المؤلفون: Julie D Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch

المصدر: PLoS ONE, Vol 6, Iss 3, p e18093 (2011)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC3069049?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/fbb2d2a601a842d6a013340053cb038c

المؤلفون: Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi

المصدر: IEEE/ACM Transactions on Computational Biology and Bioinformatics. :1-9

مصطلحات موضوعية: FOS: Biological sciences, Applied Mathematics, Genetics, Quantitative Biology - Quantitative Methods, Quantitative Methods (q-bio.QM), Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f920dc8e8b54b28e4eac2cc260308d6d
https://doi.org/10.1109/tcbb.2023.3278049

المؤلفون: Zongxu Li, Benjamin Linard, Alfried P. Vogler, Douglas W. Yu, Zhengyang Wang

المصدر: Molecular Ecology.

مصطلحات موضوعية: Genetics, Ecology, Evolution, Behavior and Systematics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a670748f50a9e38cfb65b520317cefa1
https://doi.org/10.1111/mec.16747

المؤلفون: Nikolai Romashchenko, Guillaume E. Scholz, Eric Rivals, Fabio Pardi, Benjamin Linard

المساهمون: Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), SPYGEN [Le Bourget-du-Lac]

المصدر: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2020, pp.#btaa1020. ⟨10.1093/bioinformatics/btaa1020⟩

مصطلحات موضوعية: 0106 biological sciences, Statistics and Probability, Source code, AcademicSubjects/SCI01060, Computer science, media_common.quotation_subject, Context (language use), Computational biology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, Biochemistry, Genome, law.invention, 03 medical and health sciences, Type (biology), law, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Molecular Biology, 030304 developmental biology, media_common, 0303 health sciences, Phylogenetic tree, Evolutionary significance, Original Papers, Computer Science Applications, Phylogenetics, Computational Mathematics, Task (computing), Computational Theory and Mathematics, Metagenomics, Precomputation, Recombinant DNA, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDE.BE]Environmental Sciences/Biodiversity and Ecology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d2aa00ac7fe3d977f0ec6ee5b89ec469
http://europepmc.org/articles/PMC8016494

المؤلفون: Nikolai Romashchenko, Fabio Pardi, Benjamin Linard, Eric Rivals

المساهمون: Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut Français de Bioinformatique (IFB-CORE), Institut National de Recherche en Informatique et en Automatique (Inria)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)

المصدر: Bioinformatics
Bioinformatics, 2020, 36 (21), pp.5264-5266. ⟨10.1093/bioinformatics/btaa657⟩
Bioinformatics, Oxford University Press (OUP), In press, ⟨10.1093/bioinformatics/btaa657⟩

مصطلحات موضوعية: 0106 biological sciences, Statistics and Probability, Computer science, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, Biochemistry, Workflow, 03 medical and health sciences, Placement Evaluation, Molecular Biology, Phylogeny, 030304 developmental biology, 0303 health sciences, Genome, Phylogenetic tree, Data science, Computer Science Applications, Computational Mathematics, Benchmarking, Computational Theory and Mathematics, Genetic marker, Taxonomy (biology), [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f12192df1674fd67475a636ded77274
https://pubmed.ncbi.nlm.nih.gov/32697844

المؤلفون: Tien-dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie D. Thompson, Olivier Poch, Hoan Nguyen

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://nar.oxfordjournals.org/content/early/2012/05/25/nar.gks474.full-text-lowres.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1030.4575; http://nar.oxfordjournals.org/content/early/2012/05/25/nar.gks474.full-text-lowres.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1030.4575
http://nar.oxfordjournals.org/content/early/2012/05/25/nar.gks474.full-text-lowres.pdf

المؤلفون: Ladislav Bocak, Julia Lipecki, Martijn J. T. N. Timmermans, Conrad P. D. T. Gillett, Thijmen Breeschoten, Amie Hunter, Carola Gómez-Rodríguez, Jérôme Morinière, Alfried P. Vogler, Alex Crampton-Platt, Paula Arribas, Kirsten E. Miller, Emeline Favreau, Christopher Barton, Carmelo Andújar, Rui-E Nie, Benjamin Linard

المساهمون: Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), The Natural History Museum [London] (NHM), Natural Environment Research Council (UK)

المصدر: Molecular Phylogenetics and Evolution, 128, 1-11
Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution, Elsevier, 2018, 128, pp.1-11. ⟨10.1016/j.ympev.2018.07.008⟩
Molecular Phylogenetics and Evolution 128 (2018)
Digital.CSIC. Repositorio Institucional del CSIC
instname

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Mass-trapped samples, Biology, computer.software_genre, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, symbols.namesake, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Databases, Genetic, Genetics, Animals, Biodiversity discovery, Metagenome skimming, Molecular Biology, Phylogeny, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, 0303 health sciences, Base Sequence, Phylogenetic tree, Shotgun sequencing, Linnaean taxonomy, Biosystematiek, Mitochondria, Coleoptera, Tree (data structure), 030104 developmental biology, Taxon, Metagenomics, Evolutionary biology, GenBank, Molecular phylogenetics, symbols, Biosystematics, Data mining, Mitochondrial metagenomics, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], computer, Algorithms

وصف الملف: application/octet-stream; application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3934739d0de6bd1db162e69dfb6369f1
https://doi.org/10.1016/j.ympev.2018.07.008

المؤلفون: Brent C. Emerson, Benjamin Linard, Alfried P. Vogler, María L. Moraza, Paula Arribas, Carmelo Andújar

المساهمون: Ministerio de Economía y Competitividad (España), The Natural History Museum [London] (NHM), Universidad de Navarra [Pamplona] (UNAV), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), School of Biological Sciences (BIO), University of East Anglia [Norwich] (UEA)

المصدر: Digital.CSIC. Repositorio Institucional del CSIC
instname
Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2019, ⟨10.1093/molbev/msz255⟩

مصطلحات موضوعية: 0106 biological sciences, Mitochondrial DNA, Arthropod terrestrialization, Acariformes, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, DNA, Mitochondrial, 03 medical and health sciences, Soil, Phylogenetics, Mitochondrial phylogenomics, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Genetics, Animals, Acari, Metagenome skimming, Molecular Biology, Ecology, Evolution, Behavior and Systematics, ComputingMilieux_MISCELLANEOUS, Phylogeny, 030304 developmental biology, 2. Zero hunger, 0303 health sciences, Mites, biology, Phylogenetic tree, Parasitiformes, Sequence Analysis, DNA, 15. Life on land, biology.organism_classification, Soil biodiversity, Mitochondria, Taxon, Evolutionary biology, Metagenomics, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Superorder

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bdc8a4598c13dde0d3524c2dff942a6c
http://hdl.handle.net/10261/209118

المؤلفون: Ladislav Bocak, Carmelo Andújar, Michal Motyka, Alfried P. Vogler, Benjamin Linard, Paula Arribas, Mathew Bocek

المساهمون: Ministerio de Economía y Competitividad (España), Universidad de Murcia, The Natural History Museum [London] (NHM), Palacky University Olomouc, Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Imperial College London

المصدر: Mitochondrial DNA Part B Resources
Mitochondrial DNA Part B Resources, Taylor & Francis Online, 2019, 4 (2), pp.2447-2450. ⟨10.1080/23802359.2019.1637289⟩
Digital.CSIC. Repositorio Institucional del CSIC
instname
Mitochondrial DNA. Part B, Resources
article-version (VoR) Version of Record

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Fauna, Otiorhynchus, Zoology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, DNA sequencing, 03 medical and health sciences, Soil, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Genetics, Molecular Biology, Scarabaeidae, biology, Endogean, Silvanidae, 15. Life on land, Latridiidae, biology.organism_classification, Dermestidae, Mito Communication, Coleoptera, 030104 developmental biology, Curculionidae, Next-generation sequencing, Mitochondrial metagenomics, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57cb86894037a1bae1f34e5d7e131e28
http://hdl.handle.net/10261/193168

المؤلفون: Krister M. Swenson, Benjamin Linard, Fabio Pardi

المساهمون: Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Amélioration génétique et adaptation des plantes méditerranéennes et tropicales (UMR AGAP), Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro), Institut de Biologie Computationnelle (IBC), Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Labex CeMEB : ANR-10-LABX-0004, Labex NUMEV : ANR-10-LABX-20, Labex: Labex Agro : ANR10-LABX-0001-01, European Project: 634650,H2020,H2020-PHC-2014-two-stage,VIROGENESIS(2015), Université de Montpellier (UM)-Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

المصدر: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2019, 35 (18), pp.3303-3312. ⟨10.1101/328740⟩
Bioinformatics, 2019, 35 (18), pp.3303-3312. ⟨10.1093/bioinformatics/btz068⟩
Bioinformatics, Oxford University Press (OUP), 2019, 35 (18), pp.3303-3312. ⟨10.1093/bioinformatics/btz068⟩

مصطلحات موضوعية: 0106 biological sciences, Statistics and Probability, Computer science, Sequence analysis, Sequence alignment, Computational biology, computer.software_genre, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, Biochemistry, DNA sequencing, 03 medical and health sciences, chemistry.chemical_compound, Phylogenetics, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Environmental DNA, Molecular Biology, Phylogeny, 030304 developmental biology, Sequence, 0303 health sciences, Likelihood Functions, Phylogenetic tree, Biological classification, Sequence Analysis, DNA, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Computer Science Applications, Computational Mathematics, Tree (data structure), Computational Theory and Mathematics, chemistry, Metagenomics, Precomputation, Metagenome, Data mining, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], computer, Sequence Alignment, DNA, Algorithms, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b91bdfde15d89cd6213427e94a3f292
https://pubmed.ncbi.nlm.nih.gov/30698645

المؤلفون: Benjamin Linard, David A. Andow, Débora P. Paula, Carmen S. S. Pires, Alfried P. Vogler, Edison R. Sujii

المساهمون: Parque Estaçao Biologica, The Natural History Museum [London] (NHM), University of Minnesota [Twin Cities] (UMN), University of Minnesota System

المصدر: Molecular Ecology Resources
Molecular Ecology Resources, Wiley/Blackwell, 2015, 15 (4), pp.880-892. ⟨10.1111/1755-0998.12364⟩

مصطلحات موضوعية: analyte detectability period, MESH: Sequence Analysis, DNA, Mitochondrial DNA, analyte detectability half-life, Molecular Sequence Data, Zoology, Genomics, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, DNA sequencing, MESH: Predatory Behavior, nuclear genome, MESH: Enterobacteriaceae, Enterobacteriaceae, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Botany, MESH: Coleoptera, Genetics, Animals, MESH: Animals, gut content, Ecology, Evolution, Behavior and Systematics, Aphid, MESH: Molecular Sequence Data, biology, mtDNA, Shotgun sequencing, MESH: DNA, food and beverages, DNA, Sequence Analysis, DNA, biochemical phenomena, metabolism, and nutrition, biology.organism_classification, Acyrthosiphon pisum, Coleoptera, Gastrointestinal Tract, aphid, Metagenomics, Aphids, Predatory Behavior, coccinellid, MESH: Gastrointestinal Tract, MESH: Metagenomics, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Buchnera, MESH: Aphids, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc13e55781c62d79b213a3c52b3550fe
https://doi.org/10.1111/1755-0998.12364

المؤلفون: Odile Lecompte, Florence Bedez, Julie D. Thompson, Raymond Ripp, Benjamin Linard, Olivier Poch, Xavier Brochet, Dino Moras

المساهمون: Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)

المصدر: Genomics
Genomics, Elsevier, 2013, 101 (3), pp.178-186. ⟨10.1016/j.ygeno.2012.11.003⟩

مصطلحات موضوعية: Transcription, Genetic, Sequence analysis, Biology, Splicing, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Phylogenetic distribution, CDK-activating kinase, Evolution, Molecular, 03 medical and health sciences, Transcription (biology), [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Genetics, Animals, Humans, MESH: Animals, Comparative genomic analysis, MESH: Phylogeny, MESH: Evolution, Molecular, Phylogeny, 030304 developmental biology, 0303 health sciences, MESH: Humans, TFIIH, MESH: Transcription Factor TFIIH, MESH: Transcription, Genetic, 030302 biochemistry & molecular biology, MESH: Multiprotein Complexes, P34, MESH: Protein Subunits, Cyclin-Dependent Kinases, DNA-Binding Proteins, Protein Subunits, MESH: Cyclin-Dependent Kinases, Multiprotein Complexes, RNA splicing, Proteome, P34 2, Transcription factor II H, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Transcription, Transcription Factor TFIIH, Repair, MESH: DNA-Binding Proteins

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec4406c7ad5941f67c4e75b1e4c8d08a

المؤلفون: Benjamin Linard, Julie D. Thompson, Odile Lecompte, Ngoc Nguyen, Olivier Poch

المساهمون: Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Wroclaw University of Science and Technology, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)

مصطلحات موضوعية: 0303 health sciences, Theoretical computer science, business.industry, Local topology, Biology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Machine learning, computer.software_genre, Data type, 03 medical and health sciences, Formalism (philosophy of mathematics), 0302 clinical medicine, Knowledge extraction, Complex protein, Human-based evolutionary computation, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Artificial intelligence, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], business, computer, 030217 neurology & neurosurgery, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ded563c0d0343d46c3253313a1b2c549

المؤلفون: Ladislav Bocak, Robin Kundrata, Alfried P. Vogler, Benjamin Linard, Paula Arribas, Carmelo Andújar

المساهمون: The Natural History Museum [London] (NHM), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Palacky University Olomouc

المصدر: Mitochondrial DNA Part A
Mitochondrial DNA Part A, Taylor and Francis, 2017, 28 (2), pp.156-158. ⟨10.3109/19401736.2015.1115488⟩

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Mitochondrial DNA, Elateroidea, MESH: Sequence Analysis, DNA, Genome, Insect, gene rearrangement, Genomics, Mitochondrion, Biology, MESH: Genes, Mitochondrial, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, DNA, Mitochondrial, 010603 evolutionary biology, 01 natural sciences, MESH: Gene Order, 03 medical and health sciences, Phylogenetics, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Gene Order, Genetics, MESH: Coleoptera, Animals, mitochondrion, MESH: Animals, MESH: Phylogeny, Molecular Biology, Gene, Phylogeny, MESH: Genome, Insect, MESH: Genomics, MESH: DNA, Mitochondrial, Sequence Analysis, DNA, Gene rearrangement, Ribosomal RNA, Coleoptera, mitochondrial metagenomics, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, Genes, Mitochondrial, 030104 developmental biology, Metagenomics, Genome, Mitochondrial, MESH: Genome, Mitochondrial, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2dcd0b06f2ffb75513855c195627a521
https://hal.archives-ouvertes.fr/hal-01636908

المؤلفون: David A. Andow, Alex Crampton-Platt, Carmen S. S. Pires, Amrita Srivathsan, Martijn J. T. N. Timmermans, Benjamin Linard, Lucas M. Souza, Alfried P. Vogler, Edison R. Sujii, Débora P. Paula

المساهمون: Parque Estaçao Biologica, The Natural History Museum [London] (NHM), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Dept of Genetics, Evolution and Environment [London] (UCL-GEE), University College of London [London] (UCL), National University of Singapore (NUS), Department of Life Sciences, Imperial College London, Middlesex University [London], University of Minnesota [Twin Cities] (UMN), University of Minnesota System

المصدر: PLoS ONE, Vol 11, Iss 9, p e0161841 (2016)
PLoS ONE
PLoS ONE, Public Library of Science, 2016, 11 (9), pp.e0161841. ⟨10.1371/journal.pone.0161841⟩

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Insecta, Predation, lcsh:Medicine, Generalist and specialist species, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 01 natural sciences, Food chain, Database and Informatics Methods, Invertebrate Genomics, lcsh:Science, Predator, Trophic level, Data Management, Multidisciplinary, Ecology, Shotgun sequencing, Genomics, Genomic Databases, Gastrointestinal Contents, Trophic Interactions, Insects, Coleoptera, Community Ecology, Sequence Analysis, Research Article, Computer and Information Sciences, Food Chain, Arthropoda, General Science & Technology, Sequence Databases, Biology, Research and Analysis Methods, 010603 evolutionary biology, 03 medical and health sciences, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], MD Multidisciplinary, Genetics, Animals, Microbiome, Molecular Biology Techniques, Sequencing Techniques, Molecular Biology, Taxonomy, Ecology and Environmental Sciences, lcsh:R, Organisms, Biology and Life Sciences, Computational Biology, Sequence Analysis, DNA, Genome Analysis, Invertebrates, 030104 developmental biology, Biological Databases, Evolutionary biology, Animal Genomics, Aphids, lcsh:Q, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Intraguild predation, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d42cc37fece407f8978c2bde724f1d02
https://eprints.mdx.ac.uk/20527/1/journal.pone.0161841PublishedVersion.PDF

المؤلفون: Leszek P. Pryszcz, Peer Bork, Adrian M. Altenhoff, Kimmen Sjölander, Toni Gabaldón, Christian von Mering, Odile Lecompte, Todd DeLuca, Clément-Marie Train, Maria Jesus Martin, Brigitte Boeckmann, Cécile Pereira, Kristoffer Forslund, Matthieu Muffato, Christophe Dessimoz, Suzanna E. Lewis, Salvador Capella-Gutierrez, Erik L. L. Sonnhammer, Paul Thomas, Benjamin Linard, Jaime Huerta-Cepas, Fabian Schreiber, Damian Szklarczyk, Ioannis Xenarios, Alan Wilter Sousa da Silva, Lars Juhl Jensen, Daniel A. Dalquen

المساهمون: Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne (UNIL), Universitat Pompeu Fabra [Barcelona] (UPF), Department of Genetics, Evolution and Environment, University College of London [London] (UCL), Harvard Medical School [Boston] (HMS), European Molecular Biology Laboratory [Heidelberg] (EMBL), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Barcelona Institute of Science and Technology (BIST), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Universität Zürich [Zürich] = University of Zurich (UZH), Department of Computer Science [ETH Zürich] (D-INFK), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Max Delbrück Centre for Molecular Medicine, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Swiss Institute of Bioinformatics [Genève] (SIB), Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Novo Nordisk Foundation Center for Protein Research (CPR), Faculty of Health and Medical Sciences, University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU), SRI International, Evolutionary System Biolology, University of Southern California (USC), Department of Computer Science, This work was supported by Swiss National Science Foundation grant PP00P3_150654 (to C.D.), UK Biotechnology and Biological Sciences Research Council grant BB/L018241/1 (to C.D.), Spanish Ministry of Economy and Competitiveness grant BIO2012-37161 (to T.G.), Qatar National Research Fund NPRP 5-298-3-086 (to T.G.), European Research Council grant ERC-2012-StG-310325 (to T.G.), National Institutes of Health (NIH) grantR24 OD011883 (to S.E.L.), U41 HG002273 (to S.E.L. and P.D.T.), U41 HG007822 (to M.J.M. and I.X.), Swiss State Secretariat for Education, Research and Innovation (SERI) funding (to I.X. and C.D.), US National Science Foundation EAGER Award #1355632 (to K.S.) and ANR project BIP-BIP ANR-10-BINF-03-02 (to O.L.). Furthermore, A.S.d.S., J.H.-C., M.J.M., M.M. and P.B. acknowledge support from the European Molecular Biology Laboratory, M.M. acknowledges support from the Wellcome Trust (WT095908), S.E.L. acknowledges support from Lawrence Berkeley National Laboratory core funds (Office of Basic Energy Sciences and US Department of Energy Contract No. DE-AC02-05CH11231), L.J.J. acknowledges support from the Novo Nordisk Foundation (Grant No. NNF14CC0001) and L.P.P. acknowledges support from the La Caixa–CRG International Fellowship Program., ANR-10-BINF-0003,Bip:Bip,Paradigme d'inference bayesienne pour la Biologie structurale in silico(2010), Université de Lausanne = University of Lausanne (UNIL), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH), linard, benjamin, Bio-informatique - Paradigme d'inference bayesienne pour la Biologie structurale in silico - - Bip:Bip2010 - ANR-10-BINF-0003 - BINF - VALID

المصدر: Altenhoff, A M, Boeckmann, B, Capella-Gutierrez, S, Dalquen, D A, DeLuca, T, Forslund, K, Huerta-Cepas, J, Linard, B, Pereira, C, Pryszcz, L P, Schreiber, F, da Silva, A S, Szklarczyk, D, Train, C-M, Bork, P, Lecompte, O, von Mering, C, Xenarios, I, Sjölander, K, Jensen, L J, Martin, M J, Muffato, M, Gabaldón, T, Lewis, S E, Thomas, P D, Sonnhammer, E, Dessimoz, C & Quest for Orthologs consortium 2016, ' Standardized benchmarking in the quest for orthologs ', Nature Methods, vol. 13, pp. 425-30 . https://doi.org/10.1038/nmeth.3830
Nature Methods
Nature Methods, Nature Publishing Group, 2016, 13 (5), pp.425-430. ⟨10.1038/nMeth.3830⟩
Nature Methods, 13 (5)
Altenhoff, AM; Boeckmann, B; Capella-Gutierrez, S; Dalquen, DA; DeLuca, T; Forslund, K; et al.(2016). Standardized benchmarking in the quest for orthologs. Nature Methods, 13(5), 425-430. doi: 10.1038/nmeth.3830. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/59r1v5ts
Nature Methods, 2016, 13 (5), pp.425-430. ⟨10.1038/nMeth.3830⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature methods

مصطلحات موضوعية: Proteomics, 0301 basic medicine, Service (systems architecture), Sequence Homology, Inference, Bioinformatics, computer.software_genre, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Biochemistry, Sequence Analysis, Protein, Databases, Genetic, Biological sciences, Phylogeny, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], Gene ontology, Eukaryota, Genomics, Benchmarking, Sequence annotation, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Biotechnology, Standards, animal structures, Protein function predictions, Machine learning, Article, 03 medical and health sciences, Species Specificity, Phylogenetics, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Molecular Biology, Bacteria, Models, Genetic, business.industry, Computational Biology, Cell Biology, Archaea, [SDE.BE] Environmental Sciences/Biodiversity and Ecology, Gene Ontology, Filogenia, 030104 developmental biology, Sequence homology, Cardiovascular and Metabolic Diseases, Artificial intelligence, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDE.BE]Environmental Sciences/Biodiversity and Ecology, business, Proteïnes, computer

وصف الملف: application/pdf; application/application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60866a263954de38b31c376023291243
https://curis.ku.dk/ws/files/187625712/nmeth.3830.pdf