المؤلفون: Multamäki, Elina, de Fuentes, Andres Garcia, Sieryi, Oleksii, Bykov, Alexander, Gerken, Uwe, Ranzani, Americo Tavares, Koehler, Juergen, Meglinski, Igor, Moeglich, Andreas, Takala, Heikki

المساهمون: Department of Anatomy, Medicum, University of Helsinki

مصطلحات موضوعية: gene expression, optogenetics, phytochrome, sensory photoreceptor, signal transduction, two-component system, ESCHERICHIA-COLI, GENE-EXPRESSION, SIGNALING MECHANISM, HISTIDINE KINASES, OPTICAL CONTROL, HEME OXYGENASE, BACTERIOPHYTOCHROMES, PHOTORECEPTORS, REARRANGEMENTS, Biomedicine, Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: This work was supported by the Academy of Finland grant 330678 (H.T.) , Three-year grant 2018 - 2020 from the University of Helsinki (E.M and H.T.) , and Bayreuth Humboldt Centre Senior Fellowship 2020 (E. M., A.M., and H.T.) . A.M. acknowledges support by the Deutsche For- schungsgemeinschaft (MO2192/6 - 2) and the European Commission (FET Open NEUROPA, grant agreement 863214) . Biomedicum Imaging Unit (BIU) core facility, University of Helsinki is acknowledged for their microscopy services. HiLife Flow Cytometry Unit, University of Helsinki is acknowledged for their flow cytometry services. We thank Prof. Janne Ihalainen (University of Jyvaskyla) for all the help and Dr. Robert Stabel for subcloning the ho-bphP gene fragment.; Multamäki , E , de Fuentes , A G , Sieryi , O , Bykov , A , Gerken , U , Ranzani , A T , Koehler , J , Meglinski , I , Moeglich , A & Takala , H 2022 , ' Optogenetic Control of Bacterial Expression by Red Light ' , Systems and Synthetic Biology , vol. 11 , no. 10 , pp. 3354–3367 . https://doi.org/10.1021/acssynbio.2c00259; http://hdl.handle.net/10138/353698; 000848077600001

الاتاحة: http://hdl.handle.net/10138/353698

المؤلفون: Buhrke, David, Vélazquez Escobar, Francisco, Sauthof, Luisa, Wilkening, Svea, Herder, Nico, Tavraz, Neslihan N., Willoweit, Mario, Keidel, Anke, Utesch, Tillmann, Mroginski, Maria-Andrea, Schmitt, Franz-Josef, Hildebrandt, Peter, Friedrich, Thomas

مصطلحات موضوعية: 540 Chemie und zugeordnete Wissenschaften, amino acid substitution, iRFP, bacteriophytochromes, protein, fluorescence

وصف الملف: application/pdf

Relation: https://depositonce.tu-berlin.de/handle/11303/9595; http://dx.doi.org/10.14279/depositonce-8640

الاتاحة: https://depositonce.tu-berlin.de/handle/11303/9595
https://doi.org/10.14279/depositonce-8640

المؤلفون: Rodrigues, E.M., Stiel, A.-C.

المصدر: FEBS Lett. 597, 1319-1344 (2023)

مصطلحات موضوعية: Bacteriophytochromes, Optical Imaging, Optogenetics, Photophysics, Protein Engineering, Reversibly Switchable Fluorescent Proteins, Structural Studies

Relation: info:eu-repo/semantics/altIdentifier/pmid/36915180; info:eu-repo/semantics/altIdentifier/wos/000966572600001; info:eu-repo/semantics/altIdentifier/isbn/0014-5793; info:eu-repo/semantics/altIde

الاتاحة: https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67727
https://doi.org/10.1002/1873-3468.14609

المؤلفون: Stepanenko, Olesya V., Baloban, Mikhail, Bublikov, Grigory S., Shcherbakova, Daria M., Stepanenko, Olga V., Turoverov, Konstantin K., Kuznetsova, Irina M., Verkhusha, Vladislav Vitaliyevich

المساهمون: Medicum

مصطلحات موضوعية: BILIVERDIN CHROMOPHORE, LIGHT, BACTERIOPHYTOCHROMES, BIOSYNTHESIS, MECHANISM, DOMAIN, AGP1, Biochemistry, cell and molecular biology, Forensic science and other medical sciences

وصف الملف: application/pdf

Relation: This work was supported by the US National Institutes of Health (grants CA164468, GM073913 and GM108579 to V.V.V.), the EU FP7 program (grant ERC-2013-ADG-340233 to V.V.V.), the Russian Foundation of Basic Research (grant 13-04-01842 to I.M.K.) and the MCB Program of Russian Academy of Sciences (to K.K.T.).; Stepanenko , O V , Baloban , M , Bublikov , G S , Shcherbakova , D M , Stepanenko , O V , Turoverov , K K , Kuznetsova , I M & Verkhusha , V V 2016 , ' Allosteric effects of chromophore interaction with dimeric near-infrared fluorescent proteins engineered from bacterial phytochromes ' , Scientific Reports , vol. 6 , 18750 . https://doi.org/10.1038/srep18750; http://hdl.handle.net/10138/234121; a4d40a2d-8037-468c-bbfe-67764114fced; 84952926029; 000391971000001

الاتاحة: http://hdl.handle.net/10138/234121

المؤلفون: Stepanenko, Olesya V., Stepanenko, Olga V., Kuznetsova, Irina M., Shcherbakova, Daria M., Verkhusha, Vladislav, Turoverov, Konstantin K.

المساهمون: Medicum, Department of Biochemistry and Developmental Biology

مصطلحات موضوعية: bacterial phytochrome, iRFP, IFP, near-infrared fluorescent protein, GAF domain, biliverdin, competitive inhibition, HISTIDINE KINASES, BACTERIOPHYTOCHROMES, BRIGHT, PHOTORECEPTOR, SIMILARITY, REVEALS, DOMAIN, AGP1, Biomedicine, Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: This work was supported by 16-04-01515 grant from the Russian Foundation of Basic Research (to Olesya V. Stepanenko), by Molecular and Cell Biology Program of the Russian Academy of Sciences (to Konstantin K. Turoverov), by GM122567 and NS099573 grant from the US NIH (to Vladislav V. Verkhusha) and by ERC-2013-ADG-340233 grant from the EU FP7 program (to Vladislav V. Verkhusha).; Stepanenko , O V , Stepanenko , O V , Kuznetsova , I M , Shcherbakova , D M , Verkhusha , V & Turoverov , K K 2017 , ' Interaction of Biliverdin Chromophore with Near-Infrared Fluorescent Protein BphP1-FP Engineered from Bacterial Phytochrome ' , International Journal of Molecular Sciences , vol. 18 , no. 5 , 1009 . https://doi.org/10.3390/ijms18051009; http://hdl.handle.net/10138/203370; 4307a4ed-39f1-4e62-a0f4-e87312f546cc; 85019161365; 000404113900116

الاتاحة: http://hdl.handle.net/10138/203370

المؤلفون: Elina Multamäki, Andrés García de Fuentes, Oleksii Sieryi, Alexander Bykov, Uwe Gerken, Américo Tavares Ranzani, Jürgen Köhler, Igor Meglinski, Andreas Möglich, Heikki Takala

المساهمون: Department of Anatomy, Medicum, University of Helsinki

المصدر: ACS Synthetic Biology

مصطلحات موضوعية: History, fytokromit, SIGNALING MECHANISM, Histidine Kinase, Light, Polymers and Plastics, Biomedical Engineering, HISTIDINE KINASES, fotobiologia, sensory photoreceptor, Biochemistry, Genetics and Molecular Biology (miscellaneous), Industrial and Manufacturing Engineering, bakteerit, OPTICAL CONTROL, geeniekspressio, Business and International Management, optogenetics, HEME OXYGENASE, GENE-EXPRESSION, phytochrome, optogenetiikka, PHOTORECEPTORS, Bacteria, Biliverdine, REARRANGEMENTS, BACTERIOPHYTOCHROMES, General Medicine, Phosphoric Monoester Hydrolases, Optogenetics, reseptorit (biokemia), two-component system, ESCHERICHIA-COLI, gene expression, 1182 Biochemistry, cell and molecular biology, 3111 Biomedicine, Phytochrome, valo, signal transduction

وصف الملف: application/pdf; fulltext

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad8472dd209bcf3d2300415b91ad3808
https://doi.org/10.2139/ssrn.4108992

المؤلفون: Stumpf, Daniel

المساهمون: Jakobs, Stefan Prof. Dr., Schwarzer, Dirk Prof. Dr., Enderlein, Jörg Prof. Dr.

مصطلحات موضوعية: protein-engineering, near-infrared, super-resolution microscopy, RESOLFT, fluorescent states, bacteriophytochromes, thermal relaxation, live-cell microscopy, Biologie (PPN619462639)

Time: 570

Relation: http://resolver.sub.uni-goettingen.de/purl?ediss-11858/14132; http://dx.doi.org/10.53846/goediss-9307; urn:nbn:de:gbv:7-ediss-14132-0; orcid:0000-0003-2024-6270

الاتاحة: http://resolver.sub.uni-goettingen.de/purl?ediss-11858/14132
https://doi.org/10.53846/goediss-9307
https://nbn-resolving.org/urn:nbn:de:gbv:7-ediss-14132-0

المؤلفون: Delmotte, Nathanael, Mondy, Samuel, Alunni, Benoît, Fardoux, Joël, Chaintreuil, Clémence, Vorholt, Julia A., Gourion, Benjamin

المساهمون: Institute of Microbiology, Institut des sciences du végétal (ISV), Centre National de la Recherche Scientifique (CNRS), Laboratoire des symbioses tropicales et méditerranéennes (UMR LSTM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), European Molecular Biology Organization, ANR-13-BSV7-0013,BugsInACell,Accommodation intracellulaire des bactéries symbiotiques fixatrices d'azote(2013)

المصدر: ISSN: 1661-6596.

مصطلحات موضوعية: BACTERIOPHYTOCHROMES, RHIZOBIUM, METABOLISM, GENES, AESCHYNOMENE, LEGUME NODULES, SESBANIA-ROSTRATA, PHOTOSYNTHETIC BACTERIA, proteome, photosynthetic Bradyrhizobium, symbiotic nitrogen fixation, stem nodulation, fixA, AZORHIZOBIUM-CAULINODANS ORS571, NITROGEN-FIXATION, [SDV]Life Sciences [q-bio]

Relation: PRODINRA: 268147; WOS: 000334444700018

الاتاحة: https://hal.science/hal-01219036
https://hal.science/hal-01219036v1/document
https://hal.science/hal-01219036v1/file/Delmotte-IJMS-2014_%7BBC395026-8555-45FC-A6EB-6D6EDA0219DE%7D.pdf
https://doi.org/10.3390/ijms15033660

المؤلفون: Kamper, Maria

Thesis Advisors: Jakobs, Stefan Prof. Dr.

مصطلحات موضوعية: 570, Nanoskopie, Bakteriophytochrome, STED, RESOLFT, Fluoreszenzproteine, nanoscopy, bacteriophytochromes, fluorescent proteins, Biologie (PPN619462639)

الاتاحة: http://hdl.handle.net/11858/00-1735-0000-0023-3F3A-7

المؤلفون: Olesya V. Stepanenko, Daria M. Shcherbakova, Irina M. Kuznetsova, Olga V. Stepanenko, Vladislav V. Verkhusha, Konstantin K. Turoverov

المساهمون: Medicum, Department of Biochemistry and Developmental Biology

المصدر: International Journal of Molecular Sciences
International Journal of Molecular Sciences; Volume 18; Issue 5; Pages: 1009
International Journal of Molecular Sciences, Vol 18, Iss 5, p 1009 (2017)

مصطلحات موضوعية: 0301 basic medicine, PHOTORECEPTOR, Mutant, HISTIDINE KINASES, lcsh:Chemistry, chemistry.chemical_compound, DOMAIN, PAS domain, bacterial phytochrome, iRFP, IFP, near-infrared fluorescent protein, GAF domain, biliverdin, competitive inhibition, lcsh:QH301-705.5, Spectroscopy, BRIGHT, Phytochrome, Chemistry, BACTERIOPHYTOCHROMES, General Medicine, Recombinant Proteins, 3. Good health, Computer Science Applications, Biochemistry, SIMILARITY, Protein Binding, Stereochemistry, Allosteric regulation, Cyclase, Catalysis, Article, Inorganic Chemistry, 03 medical and health sciences, Residue (chemistry), Allosteric Regulation, Bacterial Proteins, REVEALS, Cysteine, Physical and Theoretical Chemistry, Molecular Biology, AGP1, Biliverdin, Binding Sites, 030102 biochemistry & molecular biology, Organic Chemistry, Biliverdine, Chromophore, Luminescent Proteins, 030104 developmental biology, lcsh:Biology (General), lcsh:QD1-999, Amino Acid Substitution, 1182 Biochemistry, cell and molecular biology, 3111 Biomedicine, Protein Multimerization

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6de2e96ffd3d4ea74ab81c54c073bab1
https://pubmed.ncbi.nlm.nih.gov/28481303

المؤلفون: Peter Hildebrandt, Thomas Friedrich, Tillmann Utesch, Luisa Sauthof, Nico Herder, Anke Keidel, David Buhrke, Neslihan N. Tavraz, Mario Willoweit, Maria Andrea Mroginski, Svea Wilkening, Francisco Velazquez Escobar, Franz-Josef Schmitt

المصدر: Scientific Reports

مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Quantum yield, bacteriophytochromes, Article, Fluorescence spectroscopy, 03 medical and health sciences, chemistry.chemical_compound, Bacterial Proteins, Quantum Dots, iRFP, chemistry.chemical_classification, Binding Sites, Multidisciplinary, Biliverdin, 030102 biochemistry & molecular biology, Chromophore, Fluorescence, Tetrapyrrole, Amino acid, Rhodopseudomonas, Spectrometry, Fluorescence, 540 Chemie und zugeordnete Wissenschaften, 030104 developmental biology, chemistry, Biochemistry, Excited state, ddc:540, Biophysics, Phytochrome, fluorescence, protein, amino acid substitution

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c8db78caf26360b73f1abbb2b8401745

المؤلفون: Olga V. Stepanenko, Daria M. Shcherbakova, Irina M. Kuznetsova, Grigory S. Bublikov, Olesya V. Stepanenko, Konstantin K. Turoverov, Mikhail Baloban, Vladislav V. Verkhusha

المساهمون: Medicum

المصدر: Scientific Reports

مصطلحات موضوعية: 0301 basic medicine, MECHANISM, BILIVERDIN CHROMOPHORE, Allosteric regulation, Plasma protein binding, Article, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Allosteric Regulation, Bacterial Proteins, DOMAIN, Humans, BIOSYNTHESIS, Luminescent Proteins, AGP1, Multidisciplinary, Biliverdin, Protein Stability, Biliverdine, BACTERIOPHYTOCHROMES, 319 Forensic science and other medical sciences, Chromophore, Fluorescence, 030104 developmental biology, Monomer, LIGHT, Amino Acid Substitution, Microscopy, Fluorescence, chemistry, Biochemistry, Covalent bond, Biophysics, 1182 Biochemistry, cell and molecular biology, Phytochrome, 030217 neurology & neurosurgery, HeLa Cells, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad5840cdf51810bd961210ea5a340292
http://hdl.handle.net/10138/234121

المؤلفون: Benoit Alunni, Nathanaël Delmotte, Eric Giraud, Clémence Chaintreuil, Julia A. Vorholt, Benjamin Gourion, Samuel Mondy, Joël Fardoux

المساهمون: Giraud, Éric, Gourion, Benjamin, Institute of Microbiology, Institut des Sciences du Végétal, Centre National de la Recherche Scientifique (CNRS), Laboratoire des symbioses tropicales et méditerranéennes (UMR LSTM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), European Molecular Biology Organization, ANR-13-BSV7-0013,BugsInACell,Accommodation intracellulaire des bactéries symbiotiques fixatrices d'azote(2013), Agence Nationale de la Recherche (ANR) [BugsInACell ANR-13-BSV7-0013]

المصدر: International Journal of Molecular Sciences 3 (15), 3660-3670. (2014)
International Journal of Molecular Sciences, Vol 15, Iss 3, Pp 3660-3670 (2014)
International Journal of Molecular Sciences
International Journal of Molecular Sciences, MDPI, 2014, 15 (3), pp.3660-3670. ⟨10.3390/ijms15033660⟩
International Journal of Molecular Sciences, 2014, 15 (3), pp.3660-3670. ⟨10.3390/ijms15033660⟩
International Journal of Molecular Sciences, 15 (3)

مصطلحات موضوعية: Proteomics, symbiotic nitrogen fixation, Root nodule, [SDV]Life Sciences [q-bio], Plant Root Nodulation, Plant Roots, lcsh:Chemistry, fixA, Bradyrhizobium, SESBANIA-ROSTRATA, Photosynthesis, lcsh:QH301-705.5, Spectroscopy, 2. Zero hunger, Plant Stems, biology, Communication, food and beverages, Fabaceae, BACTERIOPHYTOCHROMES, General Medicine, Computer Science Applications, Host-Pathogen Interactions, AZORHIZOBIUM-CAULINODANS ORS571, Rhizobium, Electrophoresis, Polyacrylamide Gel, Photosynthetic bacteria, Root Nodules, Plant, GENES, stem nodulation, proteome, PHOTOSYNTHETIC BACTERIA, METABOLISM, Catalysis, Aeschynomene indica, Rhizobia, Inorganic Chemistry, Bacterial Proteins, Symbiosis, photosynthetic Bradyrhizobium, NITROGEN-FIXATION, LEGUME NODULES, AESCHYNOMENE, RHIZOBIUM, Botany, Physical and Theoretical Chemistry, Molecular Biology, Proteome, Photosynthetic Bradyrhizobium, Symbiotic nitrogen fixation, Stem nodulation, Organic Chemistry, biology.organism_classification, lcsh:Biology (General), lcsh:QD1-999, Mutation, Genome, Bacterial

وصف الملف: application/pdf; application/application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::060b63d2293674ced7e1023d88de343f
http://prodinra.inra.fr/record/268147

المؤلفون: Vuillet, Laurie

المساهمون: Laboratoire des symbioses tropicales et méditerranéennes (UMR LSTM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Université Montpellier II - Sciences et Techniques du Languedoc, Eric Giraud

المصدر: https://theses.hal.science/tel-00258550 ; Biochimie [q-bio.BM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2007. Français. ⟨NNT : ⟩ ; http://tel.archives-ouvertes.fr/docs/00/25/85/50/PDF/theseVUILLET.pdf.

مصطلحات موضوعية: photosynthesis, light harvesting complexes, Rhodopseudomonas palustris, bactériophytochromes, régulation, photosynthèse, antennes collectrices de lumière, [SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM]

Relation: IRD: fdi:010042437; PRODINRA: 250919

الاتاحة: https://theses.hal.science/tel-00258550
https://theses.hal.science/tel-00258550v1/document
https://theses.hal.science/tel-00258550v1/file/theseVUILLET.pdf

المؤلفون: Shi Fei, Li Nan, Liu ShaoFang, Qin Song

مصطلحات موضوعية: CODON-SUBSTITUTION MODELS, ASPEN POPULUS-TREMULA, AMINO-ACID SITES, PHYLOGENETIC ANALYSIS, MOLECULAR EVOLUTION, ADAPTIVE EVOLUTION, HISTIDINE KINASES, NATURAL VARIATION, LIGHT, BACTERIOPHYTOCHROMES, water bloom, phytochrome, Microcystis aeruginosa, positive selection, cyanobacteria, spectral characteristic

Relation: CHINESE SCIENCE BULLETIN; http://ir.qdio.ac.cn/handle/337002/173830

الاتاحة: http://ir.qdio.ac.cn/handle/337002/173830

المؤلفون: Moyano, Laura, Carrau, Analía, Petrocelli, Silvana, Kraiselburd, Ivana, Gärtner, Wolfgang, Orellano, Elena Graciela

مصطلحات موضوعية: BACTERIAL SPECK DISEASE, BACTERIOPHYTOCHROMES, LIGHT, PLANT COLONIZATION, PSEUDOMONAS SYRINGAE, VIRULENCE, https://purl.org/becyt/ford/1.6, https://purl.org/becyt/ford/1

وصف الملف: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/url/http://link.springer.com/10.1007/s10658-019-01918-5; http://hdl.handle.net/11336/182523; Moyano, Laura; Carrau, Analía; Petrocelli, Silvana; Kraiselburd, Ivana; Gärtner, Wolfgang; et al.; Bacteriophytochromes from Pseudomonas syringae pv. tomato DC3000 modulate the early stages of plant colonization during bacterial speck disease; Springer; European Journal of Plant Pathology; 156; 3; 1-2020; 695-712; CONICET Digital; CONICET

الاتاحة: http://hdl.handle.net/11336/182523