المؤلفون: Aude Bernheim, Jean Cury, Enzo Z. Poirier

المصدر: PLoS Biology, Vol 22, Iss 7 (2024)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11249213/?tool=EBI; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

URL الوصول: https://doaj.org/article/e421a803f39b437a9c682e284a247d26

المؤلفون: Florian Tesson, Alexandre Hervé, Ernest Mordret, Marie Touchon, Camille d’Humières, Jean Cury, Aude Bernheim

المصدر: Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/b7bd35a660cc47779711b3534ab06e83

المؤلفون: Antoine L Decrulle, Antoine Frénoy, Thomas A Meiller-Legrand, Aude Bernheim, Chantal Lotton, Arnaud Gutierrez, Ariel B Lindner

المصدر: PLoS Computational Biology, Vol 17, Iss 10, p e1009475 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/f2bd32c24ae24d3ca118ea95cdf465b0

المؤلفون: Aude Bernheim, Alicia Calvo-Villamañán, Clovis Basier, Lun Cui, Eduardo P. C. Rocha, Marie Touchon, David Bikard

المصدر: Nature Communications, Vol 8, Iss 1, Pp 1-9 (2017)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/d335f034b2614a128c2753ae094ff372

المؤلفون: Olaya Rendueles, Jorge A Moura de Sousa, Aude Bernheim, Marie Touchon, Eduardo P C Rocha

المصدر: PLoS Genetics, Vol 14, Iss 12, p e1007862 (2018)

مصطلحات موضوعية: Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

URL الوصول: https://doaj.org/article/4b3a78f9f0ef4a2c8c3fecde56c1368c

المؤلفون: Aude Bernheim, Flora Vincent, Adrien Bernheim

المساهمون: Association française des femmes diplômées des universités

المصدر: Diplômées 268-269(1):23-42

URL الوصول: https://www.persee.fr/doc/femdi_1965-0566_2019_num_268_1_10175

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/The_RiBoSor_An_algorithm_to_create_alternative_reading_frames_within_a_gene_/16777259

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s001

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Theoretical_protection_from_mutations_conferred_by_overlapping_reading_frames_Effect_of_different_parameters_and_models_of_loss-of-function_/16777262

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s002

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Potential_riboverlaps_in_50_bacterial_genomes_and_in_iGEM_catalog_of_standard_biological_parts_/16777265

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s003

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/GalK_is_a_counter-selectable_gene_in_presence_of_DOG_/16777268

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s004

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Candidates_found_by_the_RiBoSor_for_galK_/16777271

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s005

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Phenotype_of_the_galK-kanR_synthetic_overlap_/16777274

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s006

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Mutation_rate_is_not_affected_by_the_overlap_/16777277

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s007

المؤلفون: Antoine L. Decrulle (11540003), Antoine Frénoy (488423), Thomas A. Meiller-Legrand (9871646), Aude Bernheim (6112178), Chantal Lotton (2822462), Arnaud Gutierrez (35056), Ariel B. Lindner (109561)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, overlap converts many, even lethal cost, div >< p, synthetic biology approaches, sustain genetic constructs, overlap thus protects, essential gene within, engineering gene overlaps, synthetic constructs, essential gene, thus increasing, existing gene, costly gene, vivo <, significant fraction, scoring mutations, rationally design, purging loss, possible mutants, overlapping construct, mutations impacting, function mutations

Relation: https://figshare.com/articles/journal_contribution/Predicted_temporal_stability_of_a_multi-gene_circuits_/16777280

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009475.s008

المؤلفون: Jeremy Garb, Anna Lopatina, Aude Bernheim, Mindaugas Zaremba, Virginijus Siksnys, Sarah Melamed, Azita Leavitt, Adi Millman, Gil Amitai, Rotem Sorek

المصدر: Nature Microbiology. 7:1849-1856

مصطلحات موضوعية: Microbiology (medical), Immunology, Genetics, Cell Biology, Applied Microbiology and Biotechnology, Microbiology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::ffafdb595dd52803c109a4bc8f1ef356
https://doi.org/10.1038/s41564-022-01207-8

المؤلفون: Jean Cury, Ernest Mordret, Veronica Hernandez Trejo, Florian Tesson, Gal Ofir, Enzo Z. Poirier, Aude Bernheim

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::00be117d95eed0e8436a391626a35bf2
https://doi.org/10.1101/2022.12.12.520048

المؤلفون: Florian Tesson, Aude Bernheim

المصدر: Current opinion in microbiology. 71

مصطلحات موضوعية: Microbiology (medical), Infectious Diseases, Microbiology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b009eb868ac418c16e0e2cb37f409af
https://pubmed.ncbi.nlm.nih.gov/36423502

المؤلفون: Gil Amitai, Adi Millman, Carmel Avraham, Gilad Meitav, Sarah Melamed, Aude Bernheim, Helena Shomar, Gal Ofir, Nir Tal, Rotem Sorek, Masha M. Rosenberg

المصدر: Nature

مصطلحات موضوعية: Oxidoreductases Acting on CH-CH Group Donors, Ribonucleotide, Transcription, Genetic, T7 phage, viruses, Archaeal Proteins, Microbial metabolism, DNA-Directed DNA Polymerase, Antiviral Agents, Article, Evolution, Molecular, 03 medical and health sciences, Immune system, Bacterial Proteins, Transcription (biology), Bacteriophage T7, Humans, Viral rna, 030304 developmental biology, 0303 health sciences, Multidisciplinary, Bacteria, biology, Chemistry, 030302 biochemistry & molecular biology, Proteins, Ribonucleotides, biology.organism_classification, Terminator (genetics), Prokaryotic Cells, Biochemistry, Viperin

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::01f5f2a798f6c16b172ec3b2fa17213e
https://doi.org/10.1038/s41586-020-2762-2

المؤلفون: Adi Millman, Sarah Melamed, Azita Leavitt, Shany Doron, Aude Bernheim, Jens Hör, Jeremy Garb, Nathalie Bechon, Alexander Brandis, Anna Lopatina, Gal Ofir, Dina Hochhauser, Avigail Stokar-Avihail, Nitzan Tal, Saar Sharir, Maya Voichek, Zohar Erez, Jose Lorenzo M. Ferrer, Daniel Dar, Assaf Kacen, Gil Amitai, Rotem Sorek

المصدر: Cell hostmicrobe. 30(11)

مصطلحات موضوعية: Genome, Microbial, Bacteria, Virology, Immune System, Parasitology, Bacteriophages, Genomics, Microbiology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f0988127990418605f7389097b5f3f8
https://pubmed.ncbi.nlm.nih.gov/36302390

المؤلفون: François Rousset, Florence Depardieu, Solange Miele, Julien Dowding, Anne-Laure Laval, Erica Lieberman, Daniel Garry, Eduardo P.C. Rocha, Aude Bernheim, David Bikard

المساهمون: Biologie de Synthèse - Synthetic biology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Eligo Bioscience, Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Infection, Anti-microbiens, Modélisation, Evolution (IAME (UMR_S_1137 / U1137)), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité)-Université Sorbonne Paris Nord, This work was supported by the European Research Council (ERC) under the Europe Union’s Horizon 2020 research and innovation program (grant agreement no. 677823), by the French Government's Investissement d'Avenir program, and by Laboratoire d’Excellence 'Integrative Biology of Emerging Infectious Diseases' (ANR-10-LABX-62-IBEID). F.R. is supported by a doctoral scholarship from École normale supérieure. E.P.C.R. was partially supported by the 'Fondation pour la Recherche Médicale' (Equipe FRM EQU201903007835)., We thank Erick Denamur for providing E. coli strains and Sylvain Brisse for providing K. pneumoniae strains. We also thank Laurent Debarbieux and Mathieu de Jode for providing phages CLB_P2, LF82_P8, and AL505_P2, the P2M platform (Institut Pasteur, Paris, France) for genome sequencing, and Alicia Calvo-Villamañán and Raphaël Laurenceau for their contribution to the PARIS acronym., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), European Project: 677823,H2020,ERC-2015-STG,CRISPAIR(2016)

المصدر: Cell Host & Microbe
Cell Host & Microbe, 2022, 30 (5), pp.740-753.e5. ⟨10.1016/j.chom.2022.02.018⟩

مصطلحات موضوعية: Bacteria, Prophages, [SDV]Life Sciences [q-bio], phage satellite, mobile genetic elements, bacterial immunity, genetic diversity, Antiviral Agents, Microbiology, abortive infection, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, Virology, phage defense, Escherichia coli, Bacteriophages, Parasitology, inter-viral competition

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::480ef1d8d20ca548d7865339e2748b8d
https://hal-pasteur.archives-ouvertes.fr/pasteur-04075930/document