المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

المصدر: PLoS ONE, Vol 19, Iss 1 (2024)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10810540/?tool=EBI; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/283b60b31d194f008d9dc05246724a1b

المؤلفون: Car Reen Kok, Nisha Mulakken, James B. Thissen, Scott F. Grey, Aram Avila-Herrera, Meenu M. Upadhyay, Felipe A. Lisboa, Shalini Mabery, Eric A. Elster, Seth A. Schobel, Nicholas A. Be

المصدر: Microbiology Spectrum, Vol 11, Iss 6 (2023)

مصطلحات موضوعية: combat injury, wound infection, antimicrobial resistance, virulence, targeted sequencing, microbial genomics, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2165-0497

URL الوصول: https://doaj.org/article/bd05f9cb9e8d484091a54390746e731e

المؤلفون: Aram Avila-Herrera, James B. Thissen, Nisha Mulakken, Seth A. Schobel, Michael D. Morrison, Xiner Zhou, Scott F. Grey, Felipe A. Lisboa, Desiree Unselt, Shalini Mabery, Meenu M. Upadhyay, Crystal J. Jaing, Eric A. Elster, Nicholas A. Be

المصدر: Scientific Reports, Vol 12, Iss 1, Pp 1-17 (2022)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2045-2322

URL الوصول: https://doaj.org/article/071e4af3fffd4b6ca0ac969213e2a999

المؤلفون: Jeffrey Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H. Sandholtz, Tyshawn Ferrell, Chris Daum, Sara Hall, Brent Segelke, Kathryn T. Arrildt, Sharon Messenger, Debra A. Wadford, Crystal Jaing, Jonathan E. Allen, Monica K. Borucki

المصدر: Viruses, Vol 14, Iss 12, p 2775 (2022)

مصطلحات موضوعية: severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), variant, mutation, sequence, quasispecies, iSNV, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/12/2775; https://doaj.org/toc/1999-4915

URL الوصول: https://doaj.org/article/7c6bb0b59fab4de1938f30df1584448c

المؤلفون: Nicholas A. Be, Aram Avila-Herrera, Jonathan E. Allen, Nitin Singh, Aleksandra Checinska Sielaff, Crystal Jaing, Kasthuri Venkateswaran

المصدر: Microbiome, Vol 5, Iss 1, Pp 1-19 (2017)

مصطلحات موضوعية: International Space Station, Microbiome, Functional metagenomics, Built environment, Cleanroom, Propidium monoazide, Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-017-0292-4; https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/d14e9a5e6981496a988ede3ac7186cae

المؤلفون: Aram Avila-Herrera, James Thissen, Camilla Urbaniak, Nicholas A Be, David J Smith, Fathi Karouia, Satish Mehta, Kasthuri Venkateswaran, Crystal Jaing

المصدر: PLoS ONE, Vol 15, Iss 4, p e0231838 (2020)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/2582863443a0452d95cd7c5759c6e042

المؤلفون: Osama M. Ahmed, Aram Avila-Herrera, Khin May Tun, Paula H. Serpa, Justin Peng, Srinivas Parthasarathy, Jon-Michael Knapp, David L. Stern, Graeme W. Davis, Katherine S. Pollard, Nirao M. Shah

المصدر: Cell Reports, Vol 27, Iss 9, Pp 2527-2536.e4 (2019)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124719305844; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/49cec3c33a0f4366bb4590acb2ae948c

المؤلفون: Stacia K Wyman, Aram Avila-Herrera, Stephen Nayfach, Katherine S Pollard

المصدر: PLoS ONE, Vol 13, Iss 10, p e0205749 (2018)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC6192648?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/96c2eefafa18401dada1584f5231f8e9

المؤلفون: Nicholas A. Be, Aram Avila-Herrera, Jonathan E. Allen, Nitin Singh, Aleksandra Checinska Sielaff, Crystal Jaing, Kasthuri Venkateswaran

المصدر: Microbiome, Vol 5, Iss 1, Pp 1-2 (2017)

مصطلحات موضوعية: Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-017-0330-2; https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/baedd06ad7b14aadba08f8f68ca69555

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Sequence_read_coverage_depth_for_sequences_derived_from_neutralization_assay_/25063279

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s001
https://figshare.com/articles/journal_contribution/Sequence_read_coverage_depth_for_sequences_derived_from_neutralization_assay_/25063279

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Frequency_of_mutations_detected_in_samples_passaged_in_different_cell_lines_and_with_and_without_antiserum_selection_pressure_see_Antiserum_Pressure_section_Table_3_/25063291

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s005
https://figshare.com/articles/journal_contribution/Frequency_of_mutations_detected_in_samples_passaged_in_different_cell_lines_and_with_and_without_antiserum_selection_pressure_see_Antiserum_Pressure_section_Table_3_/25063291

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Number_of_mutations_per_sample_/25063288

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s004
https://figshare.com/articles/journal_contribution/Number_of_mutations_per_sample_/25063288

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Comparison_of_epitope_regions_for_three_SARS-CoV-2_neutralizing_antibodies_and_the_hACE2_receptor_binding_motif_RBM_/25063285

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s003
https://figshare.com/articles/journal_contribution/Comparison_of_epitope_regions_for_three_SARS-CoV-2_neutralizing_antibodies_and_the_hACE2_receptor_binding_motif_RBM_/25063285

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Mutation_distribution_among_samples_passaged_with_or_without_antibody_selection_pressure_/25063294

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s006
https://figshare.com/articles/journal_contribution/Mutation_distribution_among_samples_passaged_with_or_without_antibody_selection_pressure_/25063294

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/journal_contribution/Neutralization_assay_GFP_expression_results_/25063282

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.s002
https://figshare.com/articles/journal_contribution/Neutralization_assay_GFP_expression_results_/25063282

المؤلفون: Gareth Trubl, Kenneth M. Stedman, Kathryn F. Bywaters, Emily E. Matula, Pacifica Sommers, Simon Roux, Nancy Merino, John Yin, Jason T. Kaelber, Aram Avila-Herrera, Peter Anto Johnson, John Christy Johnson, Schuyler Borges, Peter K. Weber, Jennifer Pett-Ridge, Penelope J. Boston

المصدر: International Journal of Astrobiology. :1-25

مصطلحات موضوعية: Physics and Astronomy (miscellaneous), Space and Planetary Science, Earth and Planetary Sciences (miscellaneous), Ecology, Evolution, Behavior and Systematics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::3b18b68dd8d9a955d8598d820945307a
https://doi.org/10.1017/s1473550423000058

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/figure/Molecular_surfaces_for_the_epitope_regions_for_neutralizing_antibodies_and_amino_acids_that_are_prevalent_in_genotypes_that_escaped_antibody_neutralization_/25063300

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.g002
https://figshare.com/articles/figure/Molecular_surfaces_for_the_epitope_regions_for_neutralizing_antibodies_and_amino_acids_that_are_prevalent_in_genotypes_that_escaped_antibody_neutralization_/25063300

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/dataset/Mutations_detected_after_passage_in_cell_lines_/25063309

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.t002
https://figshare.com/articles/dataset/Mutations_detected_after_passage_in_cell_lines_/25063309

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/dataset/Antiserum_dilutions_used_and_collected_per_passage_for_selection_pressure_/25063306

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.t001
https://figshare.com/articles/dataset/Antiserum_dilutions_used_and_collected_per_passage_for_selection_pressure_/25063306

المؤلفون: Aram Avila-Herrera, Jeffrey A. Kimbrel, Jose Manuel Martí, James Thissen, Edwin A. Saada, Tracy Weisenberger, Kathryn T. Arrildt, Brent W. Segelke, Jonathan E. Allen, Adam Zemla, Monica K. Borucki

مصطلحات موضوعية: Medicine, Microbiology, Molecular Biology, Evolutionary Biology, Ecology, Immunology, Statistics, Hematology, Infectious Diseases, Virology, multiple mutations associated, deep sequencing revealed, viral population present, viral inoculum derived, viral phenotype assays, four times concurrently, escaping monoclonal antibody, differential laboratory passaging, circulating viral genotypes, three cell lines, pseudotyped virus stocks, biologically relevant outcomes, mab assessment assays, antibody neutralization assays, laboratory virus, circulating virus, viral stock, phenotypic assays, stocks could, six times

Relation: https://figshare.com/articles/dataset/Comparison_of_variant_frequencies_associated_with_cell_culture_passage_passage_under_antiserum_selection_and_mAb_selection_/25063312

الاتاحة: https://doi.org/10.1371/journal.pone.0289198.t003
https://figshare.com/articles/dataset/Comparison_of_variant_frequencies_associated_with_cell_culture_passage_passage_under_antiserum_selection_and_mAb_selection_/25063312