المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Reads_suspected_recovered_and_tossed_at_11_bp_/16848957

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.s001

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Reads_suspected_recovered_and_tossed_at_1_bp_/16848963

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.s002

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Program_parameters_/16848969

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.s003

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Ratios_of_invitrosome_starts_around_i_HincII_i_restriction_sites_in_the_genome_/16848984

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g002

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Visual_depiction_of_the_initial_classification_and_re-classification_method_/16848975

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g001

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Ratios_of_invitrosome_starts_around_i_RsaI_i_restriction_sites_in_the_genome_/16848990

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g003

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Expanded_Fig_3_/16849002

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g005

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/_i_HincII_i_occupancy_of_positions_/16849011

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g006

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/RsaI_occupancy_of_positions_/16849017

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g007

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Expanded_Fig_6_/16849026

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g008

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Expanded_Fig_7_/16849032

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g009

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Reads_suspected_recovered_and_tossed_at_200_bp_/16849038

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g010

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Role_of_sequencing_depth_and_end_bias_/16849047

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g012

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/figure/Correlations_within_sub-libraries_/16849041

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.g011

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/dataset/Reads_before_and_after_recovery_/16849050

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.t001

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/dataset/Correlations_of_known_ends_to_unknown_end_libraries_/16849056

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.t002

المؤلفون: David A. Bates (11592564), Charles E. Bates (11592567), Andrew S. Earl (11592570), Colin Skousen (11592573), Ashley N. Fetbrandt (11592576), Jordon Ritchie (11592579), Paul M. Bodily (11592582), Steven M. Johnson (17357)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Cancer, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, reads falling close, nearly identical libraries, eukaryotic gene regulation, downstream data analysis, div >< p, dna regulatory elements, although nucleosomes prefer, different known ends, nucleosomes prefer, linear dna, fragmented dna, dna fragments, dna ends, vivo <, vitro <, typically discarded, terminal ends, skew results, recover nucleosomes, reconstituted nucleosomes, nucleosome patterns, nucleosome occupancy, nucleosome formation

Relation: https://figshare.com/articles/dataset/Correlations_of_known_ends_to_unknown_end_libraries_/16849062

الاتاحة: https://doi.org/10.1371/journal.pone.0258737.t003