المؤلفون: Krysiak, Kilannin, Danos, Arpad M., Saliba, Jason, McMichael, Joshua F., Coffman, Adam C, Kiwala, Susanna, Barnell, Erica K., Sheta, Lana, Grisdale, Cameron J., Kujan, Lynzey, Pema, Shahil, Lever, Jake, Ridd, Sarah, Spies, Nicholas C., Andric, Veronica, Chiorean, Andreea, Rieke, Damian T., Clark, Kaitlin A., Reisle, Caralyn, Venigalla, Ajay C., Evans, Mark, Jani, Payal, Takahashi, Hideaki, Suda, Avila, Horak, Peter, Ritter, Deborah I., Zhou, Xin, Ainscough, Benjamin J., Delong, Sean, Kesserwan, Chimene, Lamping, Mario, Shen, Haolin, Marr, Alex R., Hoang, My H., Singhal, Kartik, Khanfar, Mariam, Li, Brian V., Lin, Wan-Hsin, Terraf, Panieh, Corson, Laura B., Salama, Yasser, Campbell, Katie M., Farncombe, Kirsten M., Ji, Jianling, Zhao, Xiaonan, Xu, Xinjie, Kanagal-Shamanna, Rashmi, King, Ian, Cotto, Kelsy C., Skidmore, Zachary L., Walker, Jason R., Zhang, Jinghui, Milosavljevic, Aleksandar, Patel, Ronak Y., Giles, Rachel H., Kim, Raymond H., Schriml, Lynn M., Mardis, Elaine R., Jones, Steven J.M., Raca, Gordana, Rao, Shruti, Madhavan, Subha, Wagner, Alex H., Griffith, Malachi, Griffith, Obi L.

وصف الملف: text

Relation: https://eprints.gla.ac.uk/286633/1/286633.pdf; Krysiak, K. et al. (2023) CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. Nucleic Acids Research , 51(D1), D1230-D1241. (doi:10.1093/nar/gkac979 ) (PMID:36373660)

الاتاحة: https://eprints.gla.ac.uk/286633/
https://eprints.gla.ac.uk/286633/1/286633.pdf

المؤلفون: Xin, Jiwen, Mark, Adam, Afrasiabi, Cyrus, Tsueng, Ginger, Juchler, Moritz, Gopal, Nikhil, Stupp, Gregory S, Putman, Timothy E, Ainscough, Benjamin J, Griffith, Obi L, Torkamani, Ali, Whetzel, Patricia L, Mungall, Christopher J, Mooney, Sean D, Su, Andrew I, Wu, Chunlei

المصدر: Genome Biology. 17(1)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Database Management Systems, Databases, Genetic, Genetic Variation, Humans, Internet, Molecular Sequence Annotation, Sequence Analysis, DNA, Software, User-Computer Interface, Annotation, Gene, Variant, API, Cloud, Repository, Database, Environmental Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/65d60426

المؤلفون: Krysiak, Kilannin, Danos, Arpad M, Saliba, Jason, McMichael, Joshua F, Coffman, Adam C, Kiwala, Susanna, Barnell, Erica K, Sheta, Lana, Grisdale, Cameron J, Kujan, Lynzey, Pema, Shahil, Lever, Jake, Ridd, Sarah, Spies, Nicholas C, Andric, Veronica, Chiorean, Andreea, Rieke, Damian T, Clark, Kaitlin A, Reisle, Caralyn, Venigalla, Ajay C, Evans, Mark, Jani, Payal, Takahashi, Hideaki, Suda, Avila, Horak, Peter, Ritter, Deborah I, Zhou, Xin, Ainscough, Benjamin J, Delong, Sean, Kesserwan, Chimene, Lamping, Mario, Shen, Haolin, Marr, Alex R, Hoang, My H, Singhal, Kartik, Khanfar, Mariam, Li, Brian V, Lin, Wan-Hsin, Terraf, Panieh, Corson, Laura B, Salama, Yasser, Campbell, Katie M, Farncombe, Kirsten M, Ji, Jianling, Zhao, Xiaonan, Xu, Xinjie, Kanagal-Shamanna, Rashmi, King, Ian, Cotto, Kelsy C, Skidmore, Zachary L

المساهمون: NCI, Cancer Moonshot and Childhood Cancer Data Initiative, Washington University Institute of Clinical and Translational Sciences, National Center for Advancing Translational Sciences, National Institutes of Health, St. Louis Children's Hospital and Washington University School of Medicine, Google Big Query, Amazon Web Services Open Data, VHL Alliance Research, Starbucks Clinical Genetics/Genomics Research Studentship, Charité - Universitätsmedizin Berlin, Berlin Institute of Health, Clinical Genome Resource, NHGRI, Bhalwani Family Charitable Foundation, NIH

المصدر: Nucleic Acids Research ; volume 51, issue D1, page D1230-D1241 ; ISSN 0305-1048 1362-4962

الاتاحة: https://doi.org/10.1093/nar/gkac979
https://academic.oup.com/nar/article-pdf/51/D1/D1230/48440588/gkac979.pdf

المؤلفون: Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Krysiak, Kilannin, Ainscough, Benjamin J., Sheta, Lana M., Pema, Shahil P., Schmidt, Alina D., Richters, Megan, Cotto, Kelsy C., Danos, Arpad M., Ramirez, Cody, Skidmore, Zachary L., Spies, Nicholas C., Hundal, Jasreet, Sediqzad, Malik S., Kunisaki, Jason, Gomez, Felicia, Trani, Lee, Matlock, Matthew, Wagner, Alex H., Swamidass, S. Joshua, Griffith, Malachi, Griffith, Obi L.

المصدر: Genetics in Medicine ; volume 21, issue 4, page 972-981 ; ISSN 1098-3600

الاتاحة: http://dx.doi.org/10.1038/s41436-018-0278-z
http://www.nature.com/articles/s41436-018-0278-z.pdf
http://www.nature.com/articles/s41436-018-0278-z
https://api.elsevier.com/content/article/PII:S1098360021009746?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1098360021009746?httpAccept=text/plain

المؤلفون: Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.

المساهمون: Susan G. Komen, U.S. Department of Defense, Cancer Prevention and Research Institute of Texas

المصدر: Nature Communications ; volume 9, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-018-05914-x
https://www.nature.com/articles/s41467-018-05914-x
https://www.nature.com/articles/s41467-018-05914-x.pdf

المؤلفون: Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.

المصدر: Nature Communications ; volume 9, issue 1 ; ISSN 2041-1723

الاتاحة: https://doi.org/10.1038/s41467-018-07407-3
https://www.nature.com/articles/s41467-018-07407-3.pdf
https://www.nature.com/articles/s41467-018-07407-3

المؤلفون: Griffith, Malachi, Spies, Nicholas C, Krysiak, Kilannin, McMichael, Joshua F, Coffman, Adam C, Danos, Arpad M, Ainscough, Benjamin J, Ramirez, Cody A, Rieke, Damian T, Kujan, Lynzey, Barnell, Erica K, Wagner, Alex H, Skidmore, Zachary L, Wollam, Amber, Liu, Connor J, Jones, Martin R, Bilski, Rachel L, Lesurf, Robert, Feng, Yan-Yang, Shah, Nakul M, Bonakdar, Melika, Trani, Lee, Matlock, Matthew, Ramu, Avinash, Campbell, Katie M, Spies, Gregory C, Graubert, Aaron P, Gangavarapu, Karthik, Eldred, James M, Larson, David E, Walker, Jason R, Good, Benjamin M, Wu, Chunlei, Su, Andrew I, Dienstmann, Rodrigo, Margolin, Adam A, Tamborero, David, Lopez-Bigas, Nuria, Jones, Steven J M, Bose, Ron, Spencer, David H, Wartman, Lukas D, Wilson, Richard K, Mardis, Elaine R, Griffith, Obi L

المصدر: Nature Genetics ; volume 49, issue 2, page 170-174 ; ISSN 1061-4036 1546-1718

الاتاحة: http://dx.doi.org/10.1038/ng.3774
http://www.nature.com/articles/ng.3774.pdf
http://www.nature.com/articles/ng.3774

المؤلفون: Krysiak, Kilannin, Danos, Arpad M., Kiwala, Susanna, McMichael, Joshua F., Coffman, Adam C., Barnell, Erica K., Sheta, Lana, Saliba, Jason, Grisdale, Cameron J., Kujan, Lynzey, Pema, Shahil, Lever, Jake, Spies, Nicholas C., Chiorean, Andreea, Rieke, Damian T., Clark, Kaitlin A., Jani, Payal, Takahashi, Hideaki, Horak, Peter, Ritter, Deborah I., Zhou, Xin, Ainscough, Benjamin J., Delong, Sean, Lamping, Mario, Marr, Alex R., Li, Brian V., Lin, Wan-Hsin, Terraf, Panieh, Salama, Yasser, Campbell, Katie M., Farncombe, Kirsten M., Ji, Jianling, Zhao, Xiaonan, Xu, Xinjie, Kanagal-Shamanna, Rashmi, Cotto, Kelsy C., Skidmore, Zachary L., Walker, Jason R., Zhang, Jinghui, Milosavljevic, Aleksandar, Patel, Ronak Y., Giles, Rachel H., Kim, Raymond H., Schriml, Lynn M., Mardis, Elaine R., Jones, Steven J. M., Raca, Gordana, Rao, Shruti, Madhavan, Subha, Wagner, Alex H., Griffith, Obi L., Griffith, Malachi

وصف الملف: text

Relation: https://eprints.gla.ac.uk/279775/1/279775.pdf; Krysiak, K. et al. (2022) A community approach to the cancer-variant-interpretation bottleneck. Nature Cancer , 3(5), pp. 522-525. (doi:10.1038/s43018-022-00379-w ) (PMID:35624339)

الاتاحة: https://eprints.gla.ac.uk/279775/
https://eprints.gla.ac.uk/279775/1/279775.pdf

المؤلفون: Griffith, Malachi, Griffith, Obi L., Krysiak, Kilannin, Skidmore, Zachary L., Christopher, Matthew J., Klco, Jeffery M., Ramu, Avinash, Lamprecht, Tamara L., Wagner, Alex H., Campbell, Katie M., Lesurf, Robert, Hundal, Jasreet, Zhang, Jin, Spies, Nicholas C., Ainscough, Benjamin J., Larson, David E., Heath, Sharon E., Fronick, Catrina, O'Laughlin, Shelly, Fulton, Robert S., Magrini, Vincent, McGrath, Sean, Smith, Scott M., Miller, Christopher A., Maher, Christopher A., Payton, Jacqueline E., Walker, Jason R., Eldred, James M., Walter, Matthew J., Link, Daniel C., Graubert, Timothy A., Westervelt, Peter, Kulkarni, Shashikant, DiPersio, John F., Mardis, Elaine R., Wilson, Richard K., Ley, Timothy J.

المصدر: Experimental Hematology ; volume 44, issue 7, page 603-613 ; ISSN 0301-472X

الاتاحة: http://dx.doi.org/10.1016/j.exphem.2016.04.011
https://api.elsevier.com/content/article/PII:S0301472X16301151?httpAccept=text/plain
https://api.elsevier.com/content/article/PII:S0301472X16301151?httpAccept=text/xml

المؤلفون: Griffith, Malachi, Walker, Jason R., Spies, Nicholas C., Ainscough, Benjamin J., Griffith, Obi L.

المساهمون: Ouellette, Francis

المصدر: PLOS Computational Biology ; volume 11, issue 8, page e1004393 ; ISSN 1553-7358

الاتاحة: http://dx.doi.org/10.1371/journal.pcbi.1004393
http://dx.plos.org/10.1371/journal.pcbi.1004393

المؤلفون: Griffith, Malachi, Griffith, Obi L., Smith, Scott M., Ramu, Avinash, Callaway, Matthew B., Brummett, Anthony M., Kiwala, Michael J., Coffman, Adam C., Regier, Allison A., Oberkfell, Ben J., Sanderson, Gabriel E., Mooney, Thomas P., Nutter, Nathaniel G., Belter, Edward A., Du, Feiyu, Long, Robert L., Abbott, Travis E., Ferguson, Ian T., Morton, David L., Burnett, Mark M., Weible, James V., Peck, Joshua B., Dukes, Adam, McMichael, Joshua F., Lolofie, Justin T., Derickson, Brian R., Hundal, Jasreet, Skidmore, Zachary L., Ainscough, Benjamin J., Dees, Nathan D., Schierding, William S., Kandoth, Cyriac, Kim, Kyung H., Lu, Charles, Harris, Christopher C., Maher, Nicole, Maher, Christopher A., Magrini, Vincent J., Abbott, Benjamin S., Chen, Ken, Clark, Eric, Das, Indraniel, Fan, Xian, Hawkins, Amy E., Hepler, Todd G., Wylie, Todd N., Leonard, Shawn M., Schroeder, William E., Shi, Xiaoqi, Carmichael, Lynn K.

المساهمون: Gardner, Paul P

المصدر: PLOS Computational Biology ; volume 11, issue 7, page e1004274 ; ISSN 1553-7358

الاتاحة: http://dx.doi.org/10.1371/journal.pcbi.1004274
http://dx.plos.org/10.1371/journal.pcbi.1004274

المؤلفون: Wagner, Alex H., Coffman, Adam C., Ainscough, Benjamin J., Spies, Nicholas C., Skidmore, Zachary L., Campbell, Katie M., Krysiak, Kilannin, Pan, Deng, McMichael, Joshua F., Eldred, James M., Walker, Jason R., Wilson, Richard K., Mardis, Elaine R., Griffith, Malachi, Griffith, Obi L.

المصدر: Nucleic Acids Research ; volume 44, issue D1, page D1036-D1044 ; ISSN 0305-1048 1362-4962

الاتاحة: http://dx.doi.org/10.1093/nar/gkv1165
http://academic.oup.com/nar/article-pdf/44/D1/D1036/16661555/gkv1165.pdf

المؤلفون: Good, Benjamin M, Ainscough, Benjamin J, McMichael, Josh F, Su, Andrew I, Griffith, Obi L

المصدر: Genome Biology ; volume 15, issue 8 ; ISSN 1474-760X

الاتاحة: http://dx.doi.org/10.1186/s13059-014-0438-7
http://link.springer.com/content/pdf/10.1186/s13059-014-0438-7.pdf
http://link.springer.com/article/10.1186/s13059-014-0438-7/fulltext.html
http://link.springer.com/content/pdf/10.1186/s13059-014-0438-7

المؤلفون: Kauwe, John S. K., Bailey, Matthew H., Ridge, Perry G., Perry, Rachel, Wadsworth, Mark E., Hoyt, Kaitlyn L., Staley, Lyndsay A., Karch, Celeste M., Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J., Bales, Kelly, Pickering, Eve H., Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Goate, Alison M.

المساهمون: Geschwind, Daniel H.

المصدر: PLoS Genetics ; volume 10, issue 10, page e1004758 ; ISSN 1553-7404

الاتاحة: http://dx.doi.org/10.1371/journal.pgen.1004758
http://dx.plos.org/10.1371/journal.pgen.1004758

المؤلفون: Xin, Jiwen, Mark, Adam, Afrasiabi, Cyrus, Tsueng, Ginger, Juchler, Moritz, Gopal, Nikhil, Stupp, Gregory S., Putman, Timothy E., Ainscough, Benjamin J., Griffith, Obi L., Torkamani, Ali, Whetzel, Patricia L., Mungall, Christopher J., Mooney, Sean D., Su, Andrew I., Wu, Chunlei

مصطلحات موضوعية: 59 BASIC BIOLOGICAL SCIENCES, 97 MATHEMATICS AND COMPUTING

وصف الملف: application/pdf

Relation: http://www.osti.gov/servlets/purl/1626935; https://www.osti.gov/biblio/1626935; https://doi.org/10.1186/s13059-016-0953-9

الاتاحة: http://www.osti.gov/servlets/purl/1626935
https://www.osti.gov/biblio/1626935
https://doi.org/10.1186/s13059-016-0953-9

المؤلفون: Ainscough, Benjamin J., Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Wagner, Alex H., Fehniger, Todd A., Dunn, Gavin P., Uppaluri, Ravindra, Govindan, Ramaswamy, Rohan, Thomas E., Griffith, Malachi, Mardis, Elaine R., Swamidass, S. Joshua, Griffith, Obi L.

المصدر: Nature Genetics ; volume 50, issue 12, page 1735-1743 ; ISSN 1061-4036 1546-1718

الاتاحة: http://dx.doi.org/10.1038/s41588-018-0257-y
http://www.nature.com/articles/s41588-018-0257-y
http://www.nature.com/articles/s41588-018-0257-y.pdf

المؤلفون: Ainscough, Benjamin J, Griffith, Malachi, Coffman, Adam C, Wagner, Alex H, Kunisaki, Jason, Choudhary, Mayank NK, McMichael, Joshua F, Fulton, Robert S, Wilson, Richard K, Griffith, Obi L, Mardis, Elaine R

المصدر: Nature Methods ; volume 13, issue 10, page 806-807 ; ISSN 1548-7091 1548-7105

الاتاحة: http://dx.doi.org/10.1038/nmeth.4000
http://www.nature.com/articles/nmeth.4000.pdf
http://www.nature.com/articles/nmeth.4000

المؤلفون: Juric, Dejan, Castel, Pau, Griffith, Malachi, Griffith, Obi L., Won, Helen H., Ellis, Haley, Ebbesen, Saya H., Ainscough, Benjamin J., Ramu, Avinash, Iyer, Gopa, Shah, Ronak H., Huynh, Tiffany, Mino-Kenudson, Mari, Sgroi, Dennis, Isakoff, Steven, Thabet, Ashraf, Elamine, Leila, Solit, David B., Lowe, Scott W., Quadt, Cornelia, Peters, Malte, Derti, Adnan, Schegel, Robert, Huang, Alan, Mardis, Elaine R., Berger, Michael F., Baselga, José, Scaltriti, Maurizio

المصدر: Nature ; volume 518, issue 7538, page 240-244 ; ISSN 0028-0836 1476-4687

الاتاحة: http://dx.doi.org/10.1038/nature13948
http://www.nature.com/articles/nature13948.pdf
http://www.nature.com/articles/nature13948

المؤلفون: Harari, Oscar, Cruchaga, Carlos, Kauwe, John S.K., Ainscough, Benjamin J., Bales, Kelly, Pickering, Eve H., Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Goate, Alison M.

المساهمون: National Institutes of Health (NIH)

المصدر: Biological Psychiatry ; volume 75, issue 9, page 723-731 ; ISSN 0006-3223

الاتاحة: http://dx.doi.org/10.1016/j.biopsych.2013.11.032
https://api.elsevier.com/content/article/PII:S0006322314000183?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0006322314000183?httpAccept=text/plain

المؤلفون: Ainscough, Benjamin J., Breinholt, Jesse W., Robison, Henry W., Crandall, Keith A.

المصدر: Zoologica Scripta ; volume 42, issue 3, page 306-316 ; ISSN 0300-3256 1463-6409

الاتاحة: http://dx.doi.org/10.1111/zsc.12006
https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fzsc.12006
https://onlinelibrary.wiley.com/doi/pdf/10.1111/zsc.12006