المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/journal_contribution/Mathematical_details_/18647435

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.s001

المؤلفون: Saurabh Modi (11198667), Supravat Dey (3929246), Abhyudai Singh (503811)

مصطلحات موضوعية: Biochemistry, Microbiology, Genetics, Molecular Biology, Biotechnology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Monte Carlo simulations, disturbance, noise sources, integral feedback, protein count fluctuations, buffers output fluctuations, protein noise level, gene product levels, buffering protein copy number fluct., PID controllers, protein population counts

Relation: https://figshare.com/articles/journal_contribution/Supplementary_text_includes_I_Comparison_of_analytical_results_with_stochastic_simulations_II_Stochastic_simulation_for_a_P_and_I_combination_circuit_III_Parametric_constraints_for_derivative_control_IV_Noise_plots_with_changing_feedback_ga/15069741

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009249.s001

المؤلفون: Christine R. Zheng (11361376), Abhyudai Singh (503811), Alexandra Libby (11361379), Pamela A. Silver (132583), Elizabeth A. Libby (11361382)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Immunology, Developmental Biology, Plant Biology, Computational Biology, wall active antibiotic, downstream transcriptional reporters, different growth conditions, bacterial signaling systems, protein kinase activity, specific kinase difficult, conserved bacterial ser, bacterial kinase activity, thr kinase activity, prkc activity increases, thr kinase, bacterial ser, specific sensors, typically inferred, several pathways, peptidoglycan synthesis, often coregulated, late steps, lactose repressor, including fret

Relation: https://figshare.com/articles/journal_contribution/Modular_and_Single-Cell_Sensors_of_Bacterial_Ser_Thr_Kinase_Activity/16547884

الاتاحة: https://doi.org/10.1021/acssynbio.1c00250.s001

المؤلفون: José E. Pérez-Ortín (8751891), Adriana Mena (10535904), Marina Barba-Aliaga (10535907), Abhyudai Singh (503811), Sebastián Chávez (237263), José García-Martínez (41415)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Developmental Biology, Cancer, cln 3 strain, Total mRNA concentration, transcription rate, copy number, RNA pol II, cell size, cell volume homeostatically controls, RNA polymerase II, cell volume, yeast Saccharomyces cerevisiae, Sir 2 histone deacetylase homeostat., mRNA stability increases, rRNA synthesis rate, RNA polymerase

Relation: https://figshare.com/articles/journal_contribution/The_number_of_rDNA_repeats_changes_in_cells_with_a_different_volume_/14383704

الاتاحة: https://doi.org/10.1371/journal.pgen.1009520.s001

المؤلفون: José E. Pérez-Ortín (8751891), Adriana Mena (10535904), Marina Barba-Aliaga (10535907), Abhyudai Singh (503811), Sebastián Chávez (237263), José García-Martínez (41415)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Developmental Biology, Cancer, cln 3 strain, Total mRNA concentration, transcription rate, copy number, RNA pol II, cell size, cell volume homeostatically controls, RNA polymerase II, cell volume, yeast Saccharomyces cerevisiae, Sir 2 histone deacetylase homeostat., mRNA stability increases, rRNA synthesis rate, RNA polymerase

Relation: https://figshare.com/articles/journal_contribution/Extrachromosomal_rDNA_circles_ERCs_analysis_/14383707

الاتاحة: https://doi.org/10.1371/journal.pgen.1009520.s002

المؤلفون: José E. Pérez-Ortín (8751891), Adriana Mena (10535904), Marina Barba-Aliaga (10535907), Abhyudai Singh (503811), Sebastián Chávez (237263), José García-Martínez (41415)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Developmental Biology, Cancer, cln 3 strain, Total mRNA concentration, transcription rate, copy number, RNA pol II, cell size, cell volume homeostatically controls, RNA polymerase II, cell volume, yeast Saccharomyces cerevisiae, Sir 2 histone deacetylase homeostat., mRNA stability increases, rRNA synthesis rate, RNA polymerase

Relation: https://figshare.com/articles/journal_contribution/Yeast_strains_used_in_this_study_/14383710

الاتاحة: https://doi.org/10.1371/journal.pgen.1009520.s003

المؤلفون: José E. Pérez-Ortín (8751891), Adriana Mena (10535904), Marina Barba-Aliaga (10535907), Abhyudai Singh (503811), Sebastián Chávez (237263), José García-Martínez (41415)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Developmental Biology, Cancer, cln 3 strain, Total mRNA concentration, transcription rate, copy number, RNA pol II, cell size, cell volume homeostatically controls, RNA polymerase II, cell volume, yeast Saccharomyces cerevisiae, Sir 2 histone deacetylase homeostat., mRNA stability increases, rRNA synthesis rate, RNA polymerase

Relation: https://figshare.com/articles/journal_contribution/Oligonucleotides_used_in_this_study_/14383713

الاتاحة: https://doi.org/10.1371/journal.pgen.1009520.s004

المؤلفون: José E. Pérez-Ortín (8751891), Adriana Mena (10535904), Marina Barba-Aliaga (10535907), Abhyudai Singh (503811), Sebastián Chávez (237263), José García-Martínez (41415)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Physiology, Biotechnology, Developmental Biology, Cancer, cln 3 strain, Total mRNA concentration, transcription rate, copy number, RNA pol II, cell size, cell volume homeostatically controls, RNA polymerase II, cell volume, yeast Saccharomyces cerevisiae, Sir 2 histone deacetylase homeostat., mRNA stability increases, rRNA synthesis rate, RNA polymerase

Relation: https://figshare.com/articles/journal_contribution/Integral_Feedback_Mathematical_Model_/14383716

الاتاحة: https://doi.org/10.1371/journal.pgen.1009520.s005

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Cell_size_distributions_obtained_using_stochastic_simulations_/18647441

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.s002

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Fitting_experimental_data_to_theory_based_on_the_model_with_stochastic_partitioning_model_II_/18647444

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.s003

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Cell_size_dynamics_in_fission_yeast_/18647456

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g001

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Fluorescence_image_of_fission_yeast_cells_and_the_segmentation_algorithm_used_in_4_to_identify_the_outline_of_a_new_born_cell_/18647450

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.s004

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Influence_of_model_parameters_on_the_cell_size_distribution_/18647462

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g003

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Connection_between_the_estimated_model_parameters_of_model_II_/18647477

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g006

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/A_detailed_model_of_cell_size_dynamics_in_fission_yeast_/18647459

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g002

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Fitting_experimental_data_to_theory_based_on_the_model_with_deterministic_partitioning_model_I_/18647474

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g005

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/figure/Further_properties_of_the_birth_size_and_cell_size_distributions_/18647468

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.g004

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/dataset/Parameters_estimated_using_lineage_data_of_cell_length_under_seven_growth_conditions_/18647489

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.t002

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/dataset/Model_parameters_and_their_meaning_/18647483

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.t001

المؤلفون: Chen Jia (2794714), Abhyudai Singh (503811), Ramon Grima (319683)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Biotechnology, Ecology, Developmental Biology, Cancer, Inorganic Chemistry, Hematology, Physical Sciences not elsewhere classified, unimodal distributions measured, escherichia coli <, best linear fit, stronger size homeostasis, three distinct phases, standard method based, theoretical cell size, size control strategy, cell size dynamics, div >< p, different growth rate, detailed stochastic model, birth size distributions, unlike many single, experiments also showed, cell size distribution, size control, cell size, added size

Relation: https://figshare.com/articles/dataset/Correlation_coefficients_between_the_birth_and_division_added_sizes_for_the_seven_growth_conditions_/18647495

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009793.t003