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1Academic Journal
المؤلفون: Lisanne Hameleers, Lucie A. Gaenssle, Salvador Bertran‐Llorens, Tjaard Pijning, Edita Jurak
المصدر: FEBS Open Bio, Vol 14, Iss 7, Pp 1133-1146 (2024)
مصطلحات موضوعية: Bacteroidetes‐Associated Carbohydrate‐binding often N‐terminal (BACON) domain, domain analyzer program, domain of unknown function 1735 (DUF1735), N‐terminal spacer, polysaccharide utilization loci (PULs), vicinity analyzer program, Biology (General), QH301-705.5
وصف الملف: electronic resource
Relation: https://doaj.org/toc/2211-5463
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2Academic Journal
المؤلفون: Pijning, Iris, Koppenhol, Levi, Dijkzeul, Danny, Brouwer, Nielis, Thomson, Sarah L., van Den Berg, Daan
المساهمون: Marcelloni, Francesco, Madani, Kurosh, van Stein, Niki, Joaquim, Joaquim
المصدر: Pijning , I , Koppenhol , L , Dijkzeul , D , Brouwer , N , Thomson , S L & van Den Berg , D 2024 , The Performance of Frequency Fitness Assignment on JSSP for Different Problem Instance Sizes . in F Marcelloni , K Madani , N van Stein & J Joaquim (eds) , IJCCI 2024 - Proceedings of the 16th International Joint Conference on Computational Intelligence - ECTA, Porto, Portugal, November 20-22, 2024 : Volume 1 . vol. 1 , International Joint Conference on Computational Intelligence , SciTePress , pp. 250-260 , 16th International Joint ....
مصطلحات موضوعية: Frequency Fitness Assignment, Hillclimber, Job Shop Scheduling Problem, Neutrality, Optimization
Relation: urn:ISBN:9789897587214
الاتاحة: https://research.vu.nl/en/publications/ee0fa9a0-7bb1-4f71-853b-fecd81619621
https://doi.org/10.5220/0012970500003837
https://hdl.handle.net/1871.1/ee0fa9a0-7bb1-4f71-853b-fecd81619621
http://www.scopus.com/inward/record.url?scp=85211463825&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85211463825&partnerID=8YFLogxK
https://www.scitepress.org/ProceedingsDetails.aspx?ID=yFiswHYpXwA=&t=1 -
3Academic Journal
المؤلفون: Pijning, Tjaard, Dijkhuizen, Lubbert
المصدر: Pijning , T & Dijkhuizen , L 2024 , ' Unprecedented Diversity of the Glycoside Hydrolase Family 70 : A Comprehensive Analysis of Sequence, Structure, and Function ' , Journal of Agricultural and Food Chemistry , vol. 72 , no. 30 , 4c04807 , pp. 16911-16929 . https://doi.org/10.1021/acs.jafc.4c04807
مصطلحات موضوعية: auxiliary domains, branching sucrase, glucansucrase, glycoside hydrolase family 70 (GH70), α-glucanotransferase
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/49988e30-f724-42a7-a896-74247af2f3fd
https://research.rug.nl/en/publications/49988e30-f724-42a7-a896-74247af2f3fd
https://doi.org/10.1021/acs.jafc.4c04807
https://pure.rug.nl/ws/files/1073771607/pijning-dijkhuizen-2024-unprecedented-diversity-of-the-glycoside-hydrolase-family-70-a-comprehensive-analysis-of.pdf
http://www.scopus.com/inward/record.url?scp=85199018395&partnerID=8YFLogxK -
4Academic Journal
المؤلفون: Jingjing Dong, Yuxiang Bai, Qin Wang, Qiuming Chen, Xiaoxiao Li, Yanli Wang, Hangyan Ji, Xiangfeng Meng, Tjaard Pijning, Birte Svensson, Lubbert Dijkhuizen, Maher Abou Hachem, Zhengyu Jin
مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Chemical Sciences not elsewhere classified, potential crucial residues, potent enzymatic tool, molecular dynamic simulations, molecular dynamic simulation, linkage specificity hallmarks, limosilactobacillus reuteri n1, limosilactobacillus reuteri <, 8 u mg, lrn1 gtfb revealed, lrn1 gtfb represents, lrn1 gtfb ), protein structural analysis, industrially important α, α1 → 6, provided unprecedented insights, high enzyme activity, gh70 gtfb α, novel gtfb, soluble protein, tailored α, like α, type 4, study promotes, starch conversion, particularly h265
الاتاحة: https://doi.org/10.1021/acs.jafc.4c00104.s001
https://figshare.com/articles/journal_contribution/Insights_into_the_Structure_Function_Relationship_of_GH70_GtfB_Glucanotransferases_from_the_Crystal_Structure_and_Molecular_Dynamic_Simulation_of_a_Newly_Characterized_i_Limosilactobacillus_reuteri_i_N1_GtfB_Enzyme/25328826 -
5Academic Journal
المؤلفون: Dong, Jingjing, Abou Hachem, Maher, Wang, Yanli, Li, Xiaoxiao, Zhang, Bo, Pijning, Tjaard, Svensson, Birte, Dijkhuizen, Lubbert, Jin, Zhengyu, Bai, Yuxiang
المصدر: Dong , J , Abou Hachem , M , Wang , Y , Li , X , Zhang , B , Pijning , T , Svensson , B , Dijkhuizen , L , Jin , Z & Bai , Y 2024 , ' Tailor-Made α-Glucans by Engineering the Processivity of α-Glucanotransferases via Tunnel-Cleft Active Center Interconversions ' , Journal of Agricultural and Food Chemistry , vol. 72 , no. 19 , pp. 11041–11050 . https://doi.org/10.1021/acs.jafc.4c01842
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/b6aee619-7c81-4a01-814f-4cac6436a241
https://research.rug.nl/en/publications/b6aee619-7c81-4a01-814f-4cac6436a241
https://doi.org/10.1021/acs.jafc.4c01842
https://pure.rug.nl/ws/files/1003928848/dong-et-al-2024-tailor-made-_-glucans-by-engineering-the-processivity-of-_-glucanotransferases-via-tunnel-cleft-active_1_.pdf -
6Academic Journal
المؤلفون: Dong, Jingjing, Bai, Yuxiang, Wang, Qin, Chen, Qiuming, Li, Xiaoxiao, Wang, Yanli, Ji, Hangyan, Meng, Xiangfeng, Pijning, Tjaard, Svensson, Birte, Dijkhuizen, Lubbert, Abou Hachem, Maher, Jin, Zhengyu
المصدر: Dong , J , Bai , Y , Wang , Q , Chen , Q , Li , X , Wang , Y , Ji , H , Meng , X , Pijning , T , Svensson , B , Dijkhuizen , L , Abou Hachem , M & Jin , Z 2024 , ' Insights into the Structure–Function Relationship of GH70 GtfB α-Glucanotransferases from the Crystal Structure and Molecular Dynamic Simulation of a Newly Characterized Limosilactobacillus reuteri N1 GtfB Enzyme ' , Journal of Agricultural and Food Chemistry , vol. 72 , no. 10 , acs.jafc.4c00104 , pp. ....
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/45dc59e2-3821-41c3-8e47-9e15fd3085a9
https://research.rug.nl/en/publications/45dc59e2-3821-41c3-8e47-9e15fd3085a9
https://doi.org/10.1021/acs.jafc.4c00104
https://pure.rug.nl/ws/files/993585122/dong-et-al-2024-insights-into-the-structure-function-relationship-of-gh70-gtfb-_-glucanotransferases-from-the-crystal.pdf -
7Academic Journal
المؤلفون: Hameleers, Lisanne, Pijning, Tjaard, Gray, Brandon B, Fauré, Régis, Jurak, Edita
المصدر: Hameleers , L , Pijning , T , Gray , B B , Fauré , R & Jurak , E 2024 , ' Novel β-galactosidase activity and first crystal structure of Glycoside Hydrolase family 154 ' , New Biotechnology , vol. 80 , pp. 1-11 . https://doi.org/10.1016/j.nbt.2023.12.011
وصف الملف: application/pdf
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8Academic Journal
المؤلفون: Pijning, Tjaard, Vujičić-Žagar, Andreja, Laan, Jan-Metske van der, Jong, René M de, Ramirez-Palacios, Carlos, Vente, Andre, Edens, Luppo, Dijkstra, Bauke W
المصدر: Pijning , T , Vujičić-Žagar , A , Laan , J-M V D , Jong , R M D , Ramirez-Palacios , C , Vente , A , Edens , L & Dijkstra , B W 2024 , ' Structural and time-resolved mechanistic investigations of protein hydrolysis by the acidic proline-specific endoprotease from Aspergillus niger ' , Protein Science , vol. 33 , no. 1 , e4856 . https://doi.org/10.1002/pro.4856
مصطلحات موضوعية: Endoprotease, Serine protease, Proline-specific, Fungal, α/β-hydrolase fold, Proteomics, Molecular dynamics assisted docking
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/a344b030-a308-43de-9745-88b3cce25d9d
https://research.rug.nl/en/publications/a344b030-a308-43de-9745-88b3cce25d9d
https://doi.org/10.1002/pro.4856
https://pure.rug.nl/ws/files/893570782/Protein_Science_-_2023_-_Pijning_-_Structural_and_time_resolved_mechanistic_investigations_of_protein_hydrolysis_by_the.pdf -
9Academic Journal
المؤلفون: Li, Xiaodan, Meng, Xiangfeng, de Leeuw, Tijn C, Te Poele, Evelien M, Pijning, Tjaard, Dijkhuizen, Lubbert, Liu, Weifeng
المصدر: Li , X , Meng , X , de Leeuw , T C , Te Poele , E M , Pijning , T , Dijkhuizen , L & Liu , W 2023 , ' Enzymatic glucosylation of polyphenols using glucansucrases and branching sucrases of glycoside hydrolase family 70 ' , Critical Reviews in Food Science and Nutrition , vol. 63 , no. 21 , 2016598 , pp. 5247–5267 . https://doi.org/10.1080/10408398.2021.2016598
وصف الملف: application/pdf
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10Academic Journal
المؤلفون: Groen in ‘t Woud, Sander, Roeleveld, Nel, van Rooij, Iris A. L. M., Feitz, Wout F. J., Schreuder, Michiel F., van der Zanden, Loes F. M., van Wijk, J. A. E., Westland, R., Renkema, K. Y., Lilien, M. R., Keijzer-Veen, M. G., Kloosterman, F. J., Steffens, M. G., Gracchi, V., Zegers, B., Jira, P. E., van der Deure, H., van Rooij, R. W. G., Wijnands - van den Berg, E., Breukels, M., de Pont, S. M. H. B., Harnisch, E., van Dael, C. M. L., Creemers, D., de Moor, R., Konijnenberg, A. Y., Knots, E., van der Kuur, E. C., Jacobs, M. J., Koppejan-Stapel, M., Pijning, A., Dorresteijn, E., Leunissen, R. W. J., Rijlaarsdam, R., del Canho, R., Semmekrot, B., Dings-Lammertink, A., Nijhuis, I. J. M., van Ledden-Klok, M. J., van den Broek, L. M., Jansen, C. Meine, Beeren, M. C. G., Blokland-Loggers, H. E., Dorrepaal, C., Pierik, L. J. W. M., Tanja, A. L.
المساهمون: Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Radboud Institute for Health Sciences, Nierstichting
المصدر: Pediatric Nephrology ; volume 38, issue 8, page 2631-2641 ; ISSN 0931-041X 1432-198X
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11Academic Journal
المؤلفون: Groen in ‘t Woud, Sander, van Gelder, Marleen M H J, van Rooij, Iris A L M, Feitz, Wout F J, Roeleveld, Nel, Schreuder, Michiel F, van der Zanden, Loes F M, van Wijk, J A E, Westland, R, Renkema, K Y, Lilien, M R, Keijzer-Veen, M G, Kloosterman, F J, Steffens, M G, Gracchi, V, Zegers, B, Jira, P E, van der Deure, H, van Rooij, R W G, Wijnands-van den Berg, E, Breukels, M, de Pont, S M H B, Harnisch, E, van Dael, C M L, Creemers, D, de Moor, R, Konijnenberg, A Y, Knots, E, van der Kuur, E C, Jacobs, M J, Koppejan-Stapel, M, Pijning, A, Dorresteijn, E, Leunissen, R W J, Rijlaarsdam, R, del Canho, R, Semmekrot, B, Dings-Lammertink, A, Nijhuis, I J M, van Ledden-Klok, M J, van den Broek, L M, Jansen, C Meine, Beeren, M C G, Blokland-Loggers, H E, Dorrepaal, C, Pierik, L J W M, Tanja, A L
المساهمون: Radboud Institute for Health Sciences, Dutch Kidney Foundation, Dutch Research Council
المصدر: Nephrology Dialysis Transplantation ; ISSN 0931-0509 1460-2385
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12Academic Journal
المؤلفون: Groen in ‘t Woud, Sander, Roeleveld, Nel, Westland, Rik, Renkema, Kirsten Y., Steffens, Martijn G., Gracchi, Valentina, Lilien, Marc R., van Wijk, Joanna A.E., Feitz, Wout F.J., Schreuder, Michiel F., van der Zanden, Loes F.M., Beeren, M.C.G., Blokland-Loggers, H.E., Breukels, M., van den Broek, L.M., del Canho, R., Creemers, D., van Dael, C.M.L., van der Deure, H., Dings-Lammertink, A., Dorrepaal, C., Dorresteijn, E., Feitz, W.F.J., Gracchi, V., Groen in ‘t Woud, S., Harnisch, E., Jacobs, M.J., Jira, P.E., Keijzer-Veen, M.G., Kloosterman, F.J., Knots, E., Konijnenberg, A.Y., Koppejan-Stapel, M., van der Kuur, E.C., van Ledden-Klok, M.J., Leunissen, R.W.J., Lilien, M.R., Jansen, C. Meine, de Moor, R., Nijhuis, I.J.M., Pierik, L.J.W.M., Pijning, A., de Pont, S.M.H.B., Renkema, K.Y., Rijlaarsdam, R., Roeleveld, N., van Rooij, R.W.G., Schreuder, M.F., Semmekrot, B., Steffens, M.G.
المصدر: Kidney International ; volume 103, issue 1, page 156-165 ; ISSN 0085-2538
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13Academic Journal
المساهمون: Fieldsend, Jonathan E., Wagner, Markus
المصدر: Brouwer , N , Dijkzeul , D , Koppenhol , L , Pijning , I & Van Den Berg , D 2022 , Survivor selection in a crossoverless evolutionary algorithm . in J E Fieldsend & M Wagner (eds) , GECCO '22 : Proceedings of the Genetic and Evolutionary Computation Conference Companion . Association for Computing Machinery, Inc , pp. 1631-1639 , 2022 Genetic and Evolutionary Computation Conference, GECCO 2022 , Virtual, Online , United States , 9/07/22 . https://doi.org/10.1145/3520304.3533950
مصطلحات موضوعية: benchmarking, evolutionary algorithm, plant propagation algorithm, survivor selection, tournament selection
وصف الملف: application/pdf
Relation: urn:ISBN:9781450392686
الاتاحة: https://research.vu.nl/en/publications/76147470-c6bb-4297-b9df-8ad0fb359cd4
https://doi.org/10.1145/3520304.3533950
https://hdl.handle.net/1871.1/76147470-c6bb-4297-b9df-8ad0fb359cd4
https://research.vu.nl/ws/files/222511853/Survivor_selection_in_a_crossoverless_evolutionary_algorithm.pdf
http://www.scopus.com/inward/record.url?scp=85136327632&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85136327632&partnerID=8YFLogxK -
14Academic Journal
المؤلفون: Koppenhol, Levi, Brouwer, Nielis, Dijkzeul, Danny, Pijning, Iris, Sleegers, Joeri, Van Den Berg, Daan
المصدر: Koppenhol , L , Brouwer , N , Dijkzeul , D , Pijning , I , Sleegers , J & Van Den Berg , D 2022 , Exactly characterizable parameter settings in a crossoverless evolutionary algorithm . in GECCO '22 : Proceedings of the Genetic and Evolutionary Computation Conference Companion . Association for Computing Machinery, Inc , pp. 1640-1649 , 2022 Genetic and Evolutionary Computation Conference, GECCO 2022 , Virtual, Online , United States , 9/07/22 . https://doi.org/10.1145/3520304.3533968
مصطلحات موضوعية: approximation algorithms, characterization, evolutionary algorithms, exact algorithms, metaheuristics, parameterization, plant propagation algorithm, PTAS, traveling salesman problem
وصف الملف: application/pdf
Relation: urn:ISBN:9781450392686
الاتاحة: https://research.vu.nl/en/publications/9662c242-f226-4cd3-957c-6d24d06e0dbc
https://doi.org/10.1145/3520304.3533968
https://hdl.handle.net/1871.1/9662c242-f226-4cd3-957c-6d24d06e0dbc
https://research.vu.nl/ws/files/218447585/Exactly_characterizable_parameter_settings_in_a_crossoverless_evolutionary_algorithm.pdf
http://www.scopus.com/inward/record.url?scp=85136323107&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85136323107&partnerID=8YFLogxK -
15Academic Journal
المؤلفون: Meng, Xiangfeng, Li, Xiaodan, Pijning, Tjaard, Wang, Xiaofei, van Leeuwen, Sander S, Dijkhuizen, Lubbert, Chen, Guanjun, Liu, Weifeng
المصدر: Meng , X , Li , X , Pijning , T , Wang , X , van Leeuwen , S S , Dijkhuizen , L , Chen , G & Liu , W 2022 , ' Characterization of the (Engineered) Branching Sucrase GtfZ-CD2 from Apilactobacillus kunkeei for Efficient Glucosylation of Benzenediol Compounds ' , Applied and environmental microbiology , vol. 88 , no. 16 , e0103122 . https://doi.org/10.1128/aem.01031-22
وصف الملف: application/pdf
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16Academic Journal
المؤلفون: Xu, Wei, Ni, Dawei, Hou, Xiaodong, Pijning, Tjaard, Guskov, Albert, Rao, Yijian, Mu, Wanmeng
المصدر: Xu , W , Ni , D , Hou , X , Pijning , T , Guskov , A , Rao , Y & Mu , W 2022 , ' Crystal Structure of Levansucrase from the Gram-Negative Bacterium Brenneria Provides Insights into Its Product Size Specificity ' , Journal of Agricultural and Food Chemistry , vol. 70 , no. 16 , pp. 5095-5105 . https://doi.org/10.1021/acs.jafc.2c01225
مصطلحات موضوعية: crystal structure, fructooligosaccharides, levan, levansucrase, product specificity
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/5a379734-fd38-4ac7-b5b2-322af7685486
https://research.rug.nl/en/publications/5a379734-fd38-4ac7-b5b2-322af7685486
https://doi.org/10.1021/acs.jafc.2c01225
https://pure.rug.nl/ws/files/211408044/acs.jafc.2c01225.pdf
http://www.scopus.com/inward/record.url?scp=85128373037&partnerID=8YFLogxK -
17Academic Journal
المؤلفون: Jiang, Yawen, Li, Xiaoxiao, Pijning, Tjaard, Bai, Yuxiang, Dijkhuizen, Lubbert
المصدر: Jiang , Y , Li , X , Pijning , T , Bai , Y & Dijkhuizen , L 2022 , ' Mutations in Amino Acid Residues of Limosilactobacillus reuteri 121 GtfB 4,6-α-Glucanotransferase that Affect Reaction and Product Specificity ' , Journal of Agricultural and Food Chemistry , vol. 70 , no. 6 , 1c07618 , pp. 1952-1961 . https://doi.org/10.1021/acs.jafc.1c07618
مصطلحات موضوعية: α-glucanotransferase, site-directed mutagenesis, catalytic mechanism, reaction and product specificity
وصف الملف: application/pdf
الاتاحة: https://hdl.handle.net/11370/6cfad533-e2d7-45de-b9a1-27c27ee25913
https://research.rug.nl/en/publications/6cfad533-e2d7-45de-b9a1-27c27ee25913
https://doi.org/10.1021/acs.jafc.1c07618
https://pure.rug.nl/ws/files/856549395/jiang-et-al-2022-mutations-in-amino-acid-residues-of-limosilactobacillus-reuteri-121-gtfb-4-6-_-glucanotransferase-that.pdf -
18Academic Journal
المؤلفون: Pijning, Tjaard, Te Poele, Evelien M, de Leeuw, Tijn C, Guskov, Albert, Dijkhuizen, Lubbert
المصدر: Pijning , T , Te Poele , E M , de Leeuw , T C , Guskov , A & Dijkhuizen , L 2022 , ' Crystal Structure of 4,6-α-Glucanotransferase GtfC-ΔC from Thermophilic Geobacillus 12AMOR1 : Starch Transglycosylation in Non-Permuted GH70 Enzymes ' , Journal of Agricultural and Food Chemistry , vol. 70 , no. 48 , 2c06394 , pp. 15283–15295 . https://doi.org/10.1021/acs.jafc.2c06394
وصف الملف: application/pdf
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19Academic Journal
المؤلفون: Pijning, Aster E., Butera, Diego, Hogg, Philip J.
المساهمون: National Health and Medical Research Council
المصدر: Journal of Thrombosis and Haemostasis ; volume 20, issue 2, page 285-292 ; ISSN 1538-7836
الاتاحة: http://dx.doi.org/10.1111/jth.15567
https://onlinelibrary.wiley.com/doi/pdf/10.1111/jth.15567
https://onlinelibrary.wiley.com/doi/full-xml/10.1111/jth.15567
https://api.elsevier.com/content/article/PII:S1538783622027933?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1538783622027933?httpAccept=text/plain -
20Academic Journal
المؤلفون: Tjaard Pijning, Dijkhuizen, Lubbert
المصدر: Journal of Agricultural & Food Chemistry; 7/31/2024, Vol. 72 Issue 30, p16911-16929, 19p