المؤلفون: T. A. Poliakova, E. V. Banaev, M. A. Tomoshevich, Т. А. Полякова, Е. В. Банаев, М. А. Томошевич

المساهمون: This research was supported by the Project VI.52.1.2 “Analysis of the intraspecific structure of resource plants in Asian Russia, selection and conservation of the gene pool” (АААА-А17-117012610054-6) and is carried out within the framework of the topic “Genomic research and genetic polymorphism of cells, organisms and populations” (0112-2020-0001)

المصدر: Vavilov Journal of Genetics and Breeding; Том 24, № 5 (2020); 481-488 ; Вавиловский журнал генетики и селекции; Том 24, № 5 (2020); 481-488 ; 2500-3259 ; 2500-0462 ; 10.18699/VJ20.637

مصطلحات موضوعية: транзиция, N. schoberi, N. sibirica, N. komarovii, genetic variability, taxonomy, molecular identification, ITS, transition, генетическая изменчивость, таксономия, молекулярная идентификация

وصف الملف: application/pdf

Relation: https://vavilov.elpub.ru/jour/article/view/2712/1405; Banaev E.V., Tomoshevich M.A., Ak-Lama T.A. Nitrariaceae. In: Marhold K., Breitwieser I. IAPT Chromosome Data 27. Taxon. 2018;67(5):1042. DOI 10.12705/675.24.; Banaev E.V., Tomoshevich M.A., Yamtyrov M.B. Variability of metric and qualitative traits of Nitraria species in relation to ecological and climatic conditions of Siberian habitats. Contemp. Probl. Ecol. 2017;10(6):664-673. DOI 10.1134/S1995425517060038.; Banaev E.V., Voronkova M.S., Vysochina G.I., Tomoshevich M.A. Population structure and differentiation of the Siberian representatives of the genus Nitraria L. (Nitrariaceae) based on the composition and content of phenolic compounds in leaves. Contemp. Probl. Ecol. 2015;8(6):735-742. DOI 10.1134/S1995425515060025.; Bolson M., Smidt E.C., Brotto M.L., Silva-Pereira V. ITS and trnHpsbA as efficient DNA barcodes to identify threatened commercial woody angiosperms from southern Brazilian Atlantic Rainforests. PLoS One. 2015;10(12):e0143049. DOI 10.1371/journal.pone.0143049.; CBOL Plant Working Group. A DNA barcode for land plants. Proc. Natl. Acad. Sci. USA. 2009;106:12794-12797.; Darriba D., Taboada G.L., Doallo R., Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods. 2012;9(8):772. DOI 10.1038/nmeth.2109.; Doyle J.J., Doyle J.L. Isolation of plant DNA from fresh tissue. Focus. 1990;12:12-15.; Efimova A.P., Poliakova T.A., Belokon M.M., Belokon Y.S., Politov D.V. Morphological and molecular genetic verification of interspecific hybrid Salix×zhataica (Salicaceae) from Central Yakutia. Russ. J. Genet. 2019;55(5):551-556. DOI 10.1134/S1022795419050053.; Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783-791.; Feng Sh., Jiang M., Shi Yu., Jiao K., Shen Ch., Lu J., Ying Q., Wang H. Application of the ribosomal DNA ITS2 region of Physalis (Solanaceae): DNA barcoding and phylogenetic study. Front. Plant Sci. 2016;7:1047. DOI 10.3389/fpls.2016.01047.; Gao T., Yao H., Song J., Zhu Y., Liu C., Chen S. Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family. BMC Evol. Biol. 2010; 10:324. DOI 10.1186/1471-2148-10-324.; Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Ser. 1999;41:95-98.; Hollingsworth P.M. Refining the DNA barcode for land plants. Proc. Natl. Acad. Sci. USA. 2011;108(49):19451-19452. DOI 10.1073/pnas.1116812108.; Guindon S., Gascuel O. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst. Biol. 2003;52:696-704.; Koropachinskii I.Y. Tree Flora of Siberia. Novosibirsk, 2016. (in Russian); Kovtonyuk N.K., Tomoshevich M.A., Banaev E.V. Typification of the name Nitraria komarovii (Nitrariaceae). Bot. Pac. 2019; 8(2):115-118. DOI 10.17581/bp.2019.08210.; Kumar S., Stecher G., Li M., Knyaz C., Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol. Biol. Evol. 2018;35(6):1547-1549. DOI 10.1093/molbev/msy096.; Li D.Z., Gao L.M., Li H.T., Wang H., Ge X.J., Liu J.Q., Chen Z.D., Zhou S.L., Chen S.L., Yang J.B., Fu C.X., Zeng C.X., Yan H.F., Zhu Y.J., Sun Y.S., Chen S.Y., Zhao L., Wang K., Yang T., Duan G.W. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc. Natl. Acad. Sci. USA. 2011; 108(49):19641-19646. DOI 10.1073/pnas.1104551108.; Muratova E.N., Goryachkina O.V., Banaev E.V. Karyological studies on Siberian species of Nitraria L. (Nitrariaceae). Turczaninowia. 2013;16(4):50-54. DOI 10.14258/turczaninowia.16.4.9. (in Russian); Peshkova G.A. Family Nitrariaceae. In: Flora of Siberia. Novosibirsk, 1996;10:34-35. (in Russian); Polyakova T.A., Shatokhina A.V., Shirmanov M.V., Bondarenko G.N. Assessment of taxonomy relationships among the Siberian representatives of Spiraea L. (section Chamaedryon Ser., Rosaceae Juss.) based on the ITS sequence polymorphism. In: Problems of Botany of South Siberia and Mongolia: Proceedings of the 14th Scientific and Practical Conference, May 25–29, 2015, Barnaul. Barnaul, 2015;353-358. (in Russian); Potter D., Still S.M., Grebenc T., Ballian D., Božič G., Franjiæ J., Kraigher H. Phylogenetic relationships in tribe Spiraeeae (Rosaceae) inferred from nucleotide sequence data. Plant Syst. Evol. 2007;266:105-118. DOI 10.1007/s00606-007-0544-z.; Rauscher J.T., Doyle J.J., Brown A.H.D. Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex. Mol. Ecol. 2003;11(12):2691-2702. DOI 10.1046/j.1365-294X.2002.01640.x.; Ren B.Q., Xiang X.G., Chen Z.D. Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Mol. Ecol. Resour. 2010;10(4):594-605. DOI 10.1111/j.1755-0998.2009.02815.x.; Rodionov A.V., Gnutikov A.A., Kotsinyan A.R., Kotseruba V.V., Nosov N.N., Punina E.O., Raiko M.P., Tyupa N.B., Kim E.S. Sequence ITS1–5.8S rDNA–ITS2 in 35S rRNA genes as a marker in grass (Poaceae) molecelar phylogeny. Uspekhi Sovremennoy Biologii = Advances in Current Biology. 2016;136(5):419-437. (in Russian); Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19(12): 1572-1574. DOI 10.1093/bioinformatics/btg180.; Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Hohna S., Larget B., Liu L., Suchard M.A., Huelsenbeck J.P. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012;61(3): 539-542. DOI 10.1093/sysbio/sys029.; Schneyer V.S. DNA barcoding is a new approach in comparative genomics of plants. Russ. J. Genet. 2009;45(11):1267-1278. DOI 10.1134/S1022795409110027.; Schneyer V.S., Rodionov A.V. Plant DNA barcodes. Uspekhi Sovremennoy Biologii = Advances in Current Biology. 2018;138(6): 531-538. DOI 10.7868/S0042132418060017. (in Russian); Song J., Shi L., Li D., Sun Y., Niu Yu., Chen Z., Luo H., Pang X., Sun Z., Liu Ch., Lv A., Deng Y., Larson-Rabin Z., Wilkinson M., Chen Sh. Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA. PLoS One. 2012;7(8):e43971. DOI 10.1371/journal.pone.0043971.; Srikulnath K., Sawasdichai S., Jantapanon T.K., Pongtongkam P., Peyachoknagul S. Phylogenetic relationship of Dendrobium species in Thailand inferred from chloroplast matK gene and nuclear rDNA ITS region. Hort. J. 2015. DOI 10.2503/hortj.MI-028.; Tamura K. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Mol. Biol. Evol. 1992;9:678-687.; Temirbayeva K., Zhang M.-L. Molecular phylogenetic and biogeographical analysis of Nitraria based on nuclear and chloroplast DNA sequences. Plant Syst. Evol. 2015;301:1897-1906. DOI 10.1007/s00606-015-1202-5.; Tomoshevich M.A., Banaev E.V., Ak-Lama T.A. Nitraria komarovii Iljin & Lava ex Bobrov (Nitrariaceae), a new record for the flora of Kazakhstan. Check List. 2019;15(5):891-897. DOI 10.15560/15.5.891.; Wang X.-Y., Zheng S.-H., Liu Y., Han J.-P. ITS2, a better DNA barcode than ITS in identification of species in Artemisia L. Chin. Herb. Med. 2016;8(4):352-358. DOI 10.1016/S1674-6384(16)60062-X.; Xu B., Zeng X.-M., Gao X.-F., Jin D.-P., Zhang L.-B. ITS non-concerted evolution and rampant hybridization in the legume genus Lespedeza (Fabaceae). Sci. Rep. 2017;7:e40057. DOI 10.1038/srep40057.; Zhang Zh.-L., Song M.-F., Guan Y.-H., Li H.-T., Niu Y.-F., Zhang L.-X., Ma X.-J. DNA barcoding in medicinal plants: testing the potential of a proposed barcoding marker for identification of Uncaria species from China. Biochem. Syst. Ecol. 2015;60:8-14. DOI 10.1016/j.bse.2015.02.017.; https://vavilov.elpub.ru/jour/article/view/2712

الاتاحة: https://vavilov.elpub.ru/jour/article/view/2712
https://doi.org/10.18699/VJ20.640

المؤلفون: T. A. Poliakova, A. V. Shatokhina, G. N. Bondarenko, D. V. Politov, Т. А. Полякова, А. В. Шатохина, Г. Н. Бондаренко, Д. В. Политов

المصدر: Vavilov Journal of Genetics and Breeding; Том 22, № 6 (2018); 654-659 ; Вавиловский журнал генетики и селекции; Том 22, № 6 (2018); 654-659 ; 2500-3259 ; 2500-0462

مصطلحات موضوعية: популяционная структура, Spiraea f lexuosa, Spiraea chamaedryfolia, nuclear microsatellite loci, SSR, multiplex panels, genetic variability, population structure, ядерные микросателлитные локусы, мультиплексные панели, генетическая изменчивость

وصف الملف: application/pdf

Relation: https://vavilov.elpub.ru/jour/article/view/1649/1114; Ashizawa K., Kimura M.K., Takahashi A., Lian Ch., Kuramoto N. Development of microsatellite markers in a riparian shrub, Spiraea thunbergii (Rosaceae). Am. J. Bot. 2012;99(7):e283­e285. DOI 10.3732/ajb.1100587.; Brzyski J.R. Isolation and characterization of microsatellite markers in the rare clonal plant, Spiraea virginiana (Rosaceae). Am. J. Bot. 2010;97:e20­e22. DOI 10.3732/ajb.1000008.; Doyle J.J., Doyle J.L. Isolation of plant DNA from fresh tissue. Focus. 1990;12:12­15. Earl D.A., von Holdt B.M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 2012;4:359­361. DOI 10.1007/s12686­011­9548­7.; Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005;14:2611­2620. DOI 10.1111/j.1365­294X.2005.02553.x.; Huh M.K. Genetic diversity and population structure of Spiraea prunifolia for. simpliciflora by inter­simple sequence repeats. J. Life Sci. 2009;19,9:1183­1189.; Jakobsson M., Rosenberg N.A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2007;23(14): 1801­1806. DOI 10.1093/bioinformatics/btm233.; Khan G., Zhang F., Gao Q., Jiao X., Fu P., Xing R., Zhang J., Chen S. Isolation of 16 microsatellite markers for Spiraea alpina and S. mongolica (Rosaceae) of the Qinghai­Tibet Plateau. Appl. Plant Sci. 2014;2(1):e1­e4. DOI 10.3732/apps.1300059.; Peakall R., Smouse P.E. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research­an update. Bioinformatics. 2012;28:2537­2539. http://bioinformatics.oxfordjournals.org/content/28/19/2537.; Pojarkova A.I. Spiraeoideae Agardh. Flora of SSSR. Ed. V.L. Komarov. Moscow; Saint­Petersburg: Academy of Sciences of USSR Publ. 1939;9:279­318.; Polyakova T.A. Vnutrividovaya izmenchivost’ dal’nevostochnyh i sibirskih vidov roda Spiraea L. Novosibirsk, 2004. (in Russian); Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155:945­959.; Rosenberg N.A. DISTRUCT: a program for the graphical display of population structure. Publishers of Center for Computational Medicine and Biology. Department of Human Genetics. University of Michigan, 2007. http://rosenberglab.bioinformatics.med.umich.edu/distruct.html.; Van Oosterhout C., Hutchinson W.F., Wills D.P.M., Shipley P. Microchecker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes. 2004;4:535­538. DOI 10.1111/j.1471­8286.2004.00684.x.; Yeh F.C., Yang R.C., Boyle T. POPGENE Version 1.31. Microsoft Window­based freeware for population genetic analysis. 1999; available at http://www.ualberta.ca/~fyeh/index.htm.; Zhang F.­Q., Gao Q.­B., Zhang D.­J., Duan Y.­Z., Li Y.­H., Fu P.­ C., Xing R., Gulzar K., Chen S.­L. Phylogeography of Spiraea alpina in the Qinghai­Tibetan Plateau inferred from chloroplast DNA sequence variations. J. Syst. Evol. 2012;50(4):276­283. DOI 10.1111/j.1759­6831.2012.00194.x.; https://vavilov.elpub.ru/jour/article/view/1649

الاتاحة: https://vavilov.elpub.ru/jour/article/view/1649
https://doi.org/10.18699/VJ18.407

المؤلفون: E. V. Vinogradova, T. A. Polyakova, A. V. Minbaleev, Е. B. Виноградова, Т. А. Полякова, А. В. Минбалеев

المساهمون: The article was prepared within the framework of the state task no. 0136-2021-0042 “Legal regulation of the digital economy, artificial intelligence, information security”.,  Статья написана в рамках Государственного задания № 0136-2021-0042 «Правовое регулирование цифровой экономики, искусственного интеллекта, информационной безопасности».

المصدر: Law Enforcement Review; Том 5, № 4 (2021); 5-19 ; Правоприменение; Том 5, № 4 (2021); 5-19 ; 2658-4050 ; 2542-1514

مصطلحات موضوعية: цифровая экономика, identification, legal regulation, social scoring, digital transformation, digital technologies, information technologies, digital economy, идентификация, правовое регулирование, социальный скоринг, цифровая трансформация, цифровые технологии, информационные технологии, droit, info

Relation: https://enforcement.omsu.ru/jour/article/view/556

الاتاحة: https://doi.org/10.52468/2542-1514.2021.5(4).5-19
https://enforcement.omsu.ru/jour/article/view/556