المؤلفون: A. Lyubitelev V., V. Studitsky M., A. Feofanov V., M. Kirpichnikov P., А. Любителев В., В. Студитский М., А. Феофанов В., М. Кирпичников П.

المصدر: Vestnik Moskovskogo universiteta. Seriya 16. Biologiya; Том 72, № 3 (2017); 169-173 ; Вестник Московского университета. Серия 16. Биология; Том 72, № 3 (2017); 169-173 ; 0137-0952

مصطلحات موضوعية: chromatin, nucleosome, linkers, sodium ions, potassium ions, fluorescence, microscopy, single molecule, хроматин, нуклеосома, линкеры, ионы натрия, ионы калия, флуоресценция, микроскопия, одиночная молекула

وصف الملف: application/pdf

Relation: https://vestnik-bio-msu.elpub.ru/jour/article/view/474/398; Ngo T.T., Zhang Q., Zhou R., Yodh J.G., Ha T. Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility // Cell. 2015. Vol. 160 N 6. P. 1135–1144.; Li G., Levitus M., Bustamante C., Widom J. Rapid spontaneous accessibility of nucleosomal DNA // Nat. Struct. Mol. Biol. 2005. Vol. 12. N 1. P. 46–53.; Gansen A., Toth K., Schwarz N.,Langowski J. Structural variability of nucleosomes detected by single-pair Forster resonance energy transfer: histone acetylation, sequence variation, and salt effects // J. Phys. Chem. B. 2009. Vol. 113. N 9. P. 2604–2613.; Gansen A., Valeri A., Hauger F., Felekyan S., Kalinin S., Toth K., Langowski J., Seidel C.A. Nucleosome disassembly intermediates characterized by single-molecule FRET // Proc. Natl. Acad. Sci. U.S.A. 2009. Vol. 106. N 36. P. 15308–15313.; Zinchenko A.A., Yoshikawa K. Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment // Biophys. J. 2005. Vol. 88. N 6. P. 4118–4123.; Savelyev A., Papoian G.A. Electrostatic, steric, and hydration interactions favor Na(+) condensation around DNA compared with K(+) // J. Am. Chem. Soc. 2006. Vol. 128. N 45. P. 14506–14518.; Materese C.K., Savelyev A., Papoian G.A. Counterion atmosphere and hydration patterns near a nucleosome core particle // J. Am. Chem. Soc. 2009. Vol. 131. N 41. P. 15005– 15013.; Gaykalova D.A., Kulaeva O.I., Bondarenko V.A., Studitsky V.M. Preparation and analysis of uniquely positioned mononucleosomes // Chromatin Protocols. Methods Mol. Biol. Vol. 523 / Ed. S.P. Chellappan. Humana Press, 2009. P. 109–123.; Kudryashova K.S., Chertkov O.V., Nikitin D.V., Pestov N.A., Kulaeva O.I., Efremenko A.V., Solonin A.S., Kirpichnikov M.P., Studitsky V.M., Feofanov A.V. Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET // Chromatin Protocols. Methods Mol. Biol. Vol. 1288 / Ed. S.P. Chellappan. N.Y.: Springer, 2015. P. 395–412.; Lyubitelev A.V., Kudryashova K.S., Mikhaylova M.S., Malyuchenko N.V., Chertkov O.V., Studitsky V.M., Feofanov A.V., Kirpichnikov M.P. Change in conformation of linker DNA upon binding of histone H1.5 to nucleosome: fluorescent microscopy of single complexes // Moscow Univ. Biol. Sci. Bull. 2016. Vol. 71. N 2. P. 108–113.; Manning G.S. The persistence length of DNA is reached from the persistence length of its null isomer through an internal electrostatic stretching force // Biophys. J. 2006. Vol. 91. N 10. P. 3607–3616.; Valieva M.E., Armeev G.A., Kudryashova K.S., Gerasimova N.S., Shaytan A.K., Kulaeva O.I., McCullough L.L., Formosa T., Georgiev P.G., Kirpichnikov M.P., Studitsky V.M., Feofanov A.V. Large-scale ATP-independent nucleosome unfolding by a histone chaperone // Nat. Struct. Mol. Biol. 2016. Vol. 23. N 12. P. 1111–1116.; Sultanov D., Gerasimova N., Kudryashova K., Maluchenko N., Kotova E., Langelier M.F., Pascal J., Kirpichnikov M., Feofanov A., Studitsky V. Unfolding of core nucleosomes by PARP- 1 revealed by spFRET microscopy // AIMS Genetics. 2017. Vol. 4. N 1. P. 21–31.; Choy J.S., Lee T.H. Structural dynamics of nucleosomes at single-molecule resolution // Trends Biochem. Sci. 2012. Vol. 37. N 10. P. 425–435.; Wei S., Falk S.J., Black B.E., Lee T.H. A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome // Nucleic Acids Res. 2015. Vol. 43. N 17. e111.; Koopmans W.J., Brehm A., Logie C., Schmidt T., van Noort J. Single-pair FRET microscopy reveals mononucleosome dynamics // J. Fluoresc. 2007. Vol. 17. N 6. P. 785–795.; Kenzaki H., Takada S. Partial unwrapping and histone tail dynamics in nucleosome revealed by coarse-grained molecular simulations // PLoS Comput. Biol. 2015. Vol. 11. N 8. e1004443.; Li Z., Kono H. Distinct roles of histone H3 and H2A tails in nucleosome stability // Sci. Rep. 2016. Vol. 6. 31437.; Forties R.A., North J.A., Javaid S., Tabbaa O.P., Fishel R., Poirier M.G., Bundschuh R. A quantitative model of nucleosome dynamics // Nucleic Acids Res. 2011. Vol. 39. N 19. P. 8306–8313.; https://vestnik-bio-msu.elpub.ru/jour/article/view/474

الاتاحة: https://vestnik-bio-msu.elpub.ru/jour/article/view/474

المؤلفون: A. Lyubitelev V., K. Kudryashova S., M. Mikhaylova S., N. Malyuchenko V., O. Chertkov V., V. Studitsky M., A. Feofanov V., M. Kirpichnikov P., А. Любителев В., К. Кудряшова С., М. Михайлова С., Н. Малюченко В., О. Чертков В., В. Студитский М., А. Феофанов В., М. Кирпичников П.

المصدر: Vestnik Moskovskogo universiteta. Seriya 16. Biologiya; № 2 (2016); 49-54 ; Вестник Московского университета. Серия 16. Биология; № 2 (2016); 49-54 ; 0137-0952

مصطلحات موضوعية: chromatin, nucleosome, linker histone H1, fluorescence, microscopy, single molecule, хроматин, нуклеосома, линкерный гистон Н1, флуоресценция, микроскопия, одиночная молекула

وصف الملف: application/pdf

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P. 12711–12716.; Syed S.H., Goutte-Gattat D., Becker N., Meyer S., Shukla M.S., Hayes J.J., Everaers R., Angelov D., Bednar J., Dimitrov S. Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome // Proc. Natl. Acad. Sci. USA. 2010. Vol. 107. N 21. P. 9620–9625.; Meyer S. B., Syed S.H., Goutte-Gattat D., Shukla M.S., Hayes J.J., Angelov D., Bednar J., Dimitrov S., Everaers R. From crystal and NMR structures, footprints and cryo-electron- micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem // Nucleic Acids Res. 2011. Vol. 39. P. 9139–9154.; Zhou B.R., Feng H., Kato H., Dai L., Yang Y., Zhou Y., Bai Y. Structural insights into the histone H1-nucleosome complex // Proc. Natl. Acad. Sci. USA. 2013. Vol. 110. N 48. P. 19390–19395.; Gaykalova D.A., Kulaeva O.I., Bondarenko V.A., Studitsky V.M. Preparation and analysis of uniquely positioned mononucleosomes // Methods Mol. Biol. 2009. Vol. 523. 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الاتاحة: https://vestnik-bio-msu.elpub.ru/jour/article/view/327