المؤلفون: Weisberg, Alexandra, Lee, Namil, Chang, Jeff, Shih, Patrick, Waldburger, Lucas, Keasling, Jay, Thompson, Mitchell

المصدر: mSystems. 8(4)

مصطلحات موضوعية: agrobacterium, comparative transcriptomics, differential RNA-seq, evolution, pathogenesis, transcription start sites, Transcriptome, Promoter Regions, Genetic, Genomics, Gene Expression Regulation, Nucleotides

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4xv8r59v
https://escholarship.org/content/qt4xv8r59v/qt4xv8r59v.pdf

المؤلفون: Nafyad Ibrahim Batu, Bayissa Chala Legissa, Geleta Dugassa Barka

المصدر: The Microbe, Vol 4, Iss , Pp 100165- (2024)

مصطلحات موضوعية: Antibiotic resistance, Promoter, Staphylococcus aureus, Transcription factor, Transcription start site, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2950194624001328; https://doaj.org/toc/2950-1946

URL الوصول: https://doaj.org/article/4bc2748f5a6843318f348e42b307a8be

المؤلفون: Huifen Cao, Yufei Zhang, Tianrong Song, Lu Xia, Ye Cai, Philipp Kapranov

المصدر: BMC Genomics, Vol 25, Iss 1, Pp 1-18 (2024)

مصطلحات موضوعية: Breakome, Single strand DNA break, Abasic site, Transcription start site, Hotspot, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/cb42d8e347ca4d26b7f8c497150a21e8

المؤلفون: Zhan, Yongqiang, Xu, Dongwei, Tian, Yizhu, Qu, Xiaoye, Sheng, Mingwei, Lin, Yuanbang, Ke, Michael, Jiang, Longfeng, Xia, Qiang, Kaldas, Fady M, Farmer, Douglas G, Ke, Bibo

المصدر: JHEP reports : innovation in hepatology. 4(9)

مصطلحات موضوعية: ALT, alanine aminotransferase, APAF1, apoptotic peptidase activating factor 1, ASK1, apoptosis signal-regulating kinase 1, AST, aspartate aminotransferase, Apoptosis, BMM, bone marrow-derived macrophage, CXCL-10, C-X-C motif chemokine ligand 10, CYLD, cyclindromatosis, ChIP, chromatin immunoprecipitation, DAMP, damage-associated molecular pattern, DUB, deubiquitinating enzyme, ER, endoplasmic reticulum, ES, embryonic stem, G3BP1, G3BP1, Ras GTPase-activating protein-binding protein 1, GCLC, glutamate-cysteine ligase catalytic subunit, GCLM, glutamate-cysteine ligase regulatory subunit, IHC, immunohistochemistry, INF-β, interferon-β, IR, ischaemia/reperfusion, IRF3, IRF3, interferon regulatory factor 3, IRF7, IFN-regulating transcription factor 7, IRI, ischaemia/reperfusion injury, Innate immunity, KO, knockout, LPS, lipopolysaccharide, Liver inflammation, Lyz2, Lysozyme 2, MCP-1, monocyte chemoattractant protein 1, NOX2, NADPH oxidase 2, NOX4, NADPH oxidase 4, NQO1, NAD(P)H quinone dehydrogenase 1, NRF2, nuclear factor (erythroid-derived 2)-like 2, NS, non-specific, Necroptosis, OASL1, 2′, 5′oligoadenylate synthetase-like 1, PAMP, pathogen-derived molecular pattern, RIPK3, receptor-interacting serine/threonine-protein kinase 3, ROS, reactive oxygen species, STING, STING, stimulator of interferon genes, TBK1, TANK-binding kinase 1, TLR4, Toll-like receptor 4, TNF-α, tumour necrosis factor-alpha, TRX, thioredoxin, TSS, transcription start sites, TXNIP, thioredoxin-interacting protein, TXNIPFL/FL, floxed TXNIP, TXNIPM-KO, myeloid-specific TXNIP KO, UTR, untranslated region, sALT, serum ALT, sAST, serum AST, siRNA, small interfering RNA, Liver Disease, Digestive Diseases, Chronic Liver Disease and Cirrhosis, Aetiology, 2.1 Biological and endogenous factors, Good Health and Well Being

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/54g9807f

المؤلفون: Zhixin Bie, Yi Ping, Xiaoguang Li, Xun Lan, Lihui Wang

المصدر: Biomolecules, Vol 14, Iss 6, p 716 (2024)

مصطلحات موضوعية: cfDNA, coverage patterns at the transcription start sites, early cancer screening, EGFR mutation status prediction, machine learning, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2218-273X/14/6/716; https://doaj.org/toc/2218-273X

URL الوصول: https://doaj.org/article/eb92c889589e4797a6d756daf2632333

المؤلفون: Reis, R.S., Clúa, J., Jaskolowski, A., Deforges, J., Jacques-Vuarambon, D., Guex, N., Poirier, Y.

المصدر: The Plant journal, vol. 120, no. 1, pp. 218-233

مصطلحات موضوعية: Arabidopsis/genetics, Arabidopsis/metabolism, Transcription Initiation Site, Phosphates/deficiency, Phosphates/metabolism, 5' Untranslated Regions/genetics, Gene Expression Regulation, Plant, RNA, Messenger/genetics, Messenger/metabolism, Arabidopsis Proteins/genetics, Arabidopsis Proteins/metabolism, ECT4, noncoding RNA, phosphate deficiency, transcription start sites, upstream open reading frame

وصف الملف: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/39164918; info:eu-repo/semantics/altIdentifier/eissn/1365-313X; info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_DFA16258AAE33; https://serval.unil.ch/notice/serval:BIB_DFA16258AAE3; https://serval.unil.ch/resource/serval:BIB_DFA16258AAE3.P001/REF.pdf

الاتاحة: https://serval.unil.ch/notice/serval:BIB_DFA16258AAE3
https://doi.org/10.1111/tpj.16982
https://serval.unil.ch/resource/serval:BIB_DFA16258AAE3.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_DFA16258AAE33

المؤلفون: RuTao Lin, JingQi Liu, Si Shan, Yu Zhang, Yu Yang

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Inorganic Chemistry, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, transcription start site, important functional role, downregulated expression suggests, sup >&# 8722, 2 +, methylation levels increased, div >< p, differentially methylated genes, genomic dna n, genomic dna methylation, acidithiobacillus ferrooxidans <, 7 kegg pathways, riscs oxidizing conditions, dna n, genomic methylation, oxidizing conditions, mrna expression, ferrooxidans <, metabolic pathways, two conditions

Relation: https://figshare.com/articles/journal_contribution/Partially_methylated_genes_with_different_degrees_of_methylation_and_their_primers_/25135650

الاتاحة: https://doi.org/10.1371/journal.pone.0298204.s001
https://figshare.com/articles/journal_contribution/Partially_methylated_genes_with_different_degrees_of_methylation_and_their_primers_/25135650

المؤلفون: RuTao Lin, JingQi Liu, Si Shan, Yu Zhang, Yu Yang

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Inorganic Chemistry, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, transcription start site, important functional role, downregulated expression suggests, sup >&# 8722, 2 +, methylation levels increased, div >< p, differentially methylated genes, genomic dna n, genomic dna methylation, acidithiobacillus ferrooxidans <, 7 kegg pathways, riscs oxidizing conditions, dna n, genomic methylation, oxidizing conditions, mrna expression, ferrooxidans <, metabolic pathways, two conditions

Relation: https://figshare.com/articles/journal_contribution/Methylated_differentially_expressed_genes_in_enrichment_pathways_/25135653

الاتاحة: https://doi.org/10.1371/journal.pone.0298204.s002
https://figshare.com/articles/journal_contribution/Methylated_differentially_expressed_genes_in_enrichment_pathways_/25135653

المؤلفون: Troy Zhang, Hui Yu, Yongsheng Bai, Yan Guo

المصدر: Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 4887-4894 (2023)

مصطلحات موضوعية: Long Noncoding RNA, Mutation Density, Transcription Start Site, Mutation Strand Bias, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037023003392; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/46b784194b74496382fd1c7d384be934

المؤلفون: Cass, Ashley A, Xiao, Xinshu

المصدر: Cell Systems. 9(4)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, 3' Untranslated Regions, Gene Expression Profiling, Humans, Polyadenylation, RNA, Messenger, Sequence Analysis, RNA, Software, Transcription, Genetic, GTEx, RNA-seq, alternative polyadenylation, alternative transcription start site, change point, human, tissues, Biochemistry and Cell Biology, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5tp8c1wg
https://escholarship.org/content/qt5tp8c1wg/qt5tp8c1wg.pdf

المؤلفون: Thanh-Hoang Nguyen-Vo, Quang H. Trinh, Loc Nguyen, Phuong-Uyen Nguyen-Hoang, Susanto Rahardja, Binh P. Nguyen

المصدر: BMC Genomics, Vol 23, Iss S5, Pp 1-12 (2022)

مصطلحات موضوعية: DNA, Transcription start site, Promoter, TATA-box, Bidirectional long short-term memory, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/08e33e81a2c047b2ab6f7804ec59d920

المؤلفون: Juexiao Zhou, Bin Zhang, Haoyang Li, Longxi Zhou, Zhongxiao Li, Yongkang Long, Wenkai Han, Mengran Wang, Huanhuan Cui, Jingjing Li, Wei Chen, Xin Gao

المصدر: Genomics, Proteomics & Bioinformatics, Vol 20, Iss 5, Pp 959-973 (2022)

مصطلحات موضوعية: Transcription start site, Machine learning, Deep learning, Meta-learning, RNA sequencing, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022922001656; https://doaj.org/toc/1672-0229

URL الوصول: https://doaj.org/article/9d3198e72b4a4e9181ba9fa0e2865af8

المؤلفون: Lucas Waldburger, Mitchell G. Thompson, Alexandra J. Weisberg, Namil Lee, Jeff H. Chang, Jay D. Keasling, Patrick M. Shih

المصدر: mSystems, Vol 8, Iss 4 (2023)

مصطلحات موضوعية: agrobacterium, transcription start sites, differential RNA-seq, evolution, pathogenesis, comparative transcriptomics, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5077

URL الوصول: https://doaj.org/article/9d88026871ca43c5854a4552a1ea73b5

المؤلفون: Runxuan Zhang, Richard Kuo, Max Coulter, Cristiane P. G. Calixto, Juan Carlos Entizne, Wenbin Guo, Yamile Marquez, Linda Milne, Stefan Riegler, Akihiro Matsui, Maho Tanaka, Sarah Harvey, Yubang Gao, Theresa Wießner-Kroh, Alejandro Paniagua, Martin Crespi, Katherine Denby, Asa ben Hur, Enamul Huq, Michael Jantsch, Artur Jarmolowski, Tino Koester, Sascha Laubinger, Qingshun Quinn Li, Lianfeng Gu, Motoaki Seki, Dorothee Staiger, Ramanjulu Sunkar, Zofia Szweykowska-Kulinska, Shih-Long Tu, Andreas Wachter, Robbie Waugh, Liming Xiong, Xiao-Ning Zhang, Ana Conesa, Anireddy S. N. Reddy, Andrea Barta, Maria Kalyna, John W. S. Brown

المصدر: Genome Biology, Vol 23, Iss 1, Pp 1-37 (2022)

مصطلحات موضوعية: Arabidopsis, Iso-seq, Reference transcript dataset, Splice junction, Transcription start and end sites, Alternative splicing, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/a753e2cdc48c4e7cbc7f127b69335e29

المؤلفون: Pavel A. Makhnovskii, Oleg A. Gusev, Roman O. Bokov, Guzel R. Gazizova, Tatiana F. Vepkhvadze, Evgeny A. Lysenko, Olga L. Vinogradova, Fedor A. Kolpakov, Daniil V. Popov

المصدر: Human Genomics, Vol 16, Iss 1, Pp 1-13 (2022)

مصطلحات موضوعية: Transcription start site, CAGE, Differential TSSs usage, Promoter shift, Transcription factor, Medicine, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1479-7364

URL الوصول: https://doaj.org/article/90be882482be4e3da645e03593845d99

المؤلفون: Lorenz Bartsch, Michael P. Schroeder, Sonja Hänzelmann, Lorenz Bastian, Juan Lázaro-Navarro, Cornelia Schlee, Jutta Ortiz Tanchez, Veronika Schulze, Konstandina Isaakidis, Michael A. Rieger, Nicola Gökbuget, Cornelia Eckert, Hubert Serve, Martin Horstmann, Martin Schrappe, Monika Brüggemann, Claudia D. Baldus, Martin Neumann

المصدر: BMC Genomic Data, Vol 23, Iss 1, Pp 1-13 (2022)

مصطلحات موضوعية: B-cell precursor acute lymphoblastic leukemia, Relapse, NH, HeH, High hyperdiploid, Cryptic transcription start site, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2730-6844

URL الوصول: https://doaj.org/article/09f3d7f0ee36410499c81781f4b8a802

المؤلفون: Feyissa Hamde, Hunduma Dinka, Mohammed Naimuddin

المصدر: Journal of Genetic Engineering and Biotechnology, Vol 20, Iss 1, Pp 1-12 (2022)

مصطلحات موضوعية: M. colombiense, Transcription start site, Promoter, Motif, CpG islands, Antibiotic resistance, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2090-5920

URL الوصول: https://doaj.org/article/610585643fc94e6f85489b9e1fb33039

المؤلفون: José A. Barbero-Aparicio, Alicia Olivares-Gil, José F. Díez-Pastor, César García-Osorio

المصدر: PeerJ Computer Science, Vol 9, p e1340 (2023)

مصطلحات موضوعية: Transcription start site, Bioinformatics, Machine learning, Deep learning, Support vector machine, Long short-term memory, Electronic computers. Computer science, QA75.5-76.95

وصف الملف: electronic resource

Relation: https://peerj.com/articles/cs-1340.pdf; https://peerj.com/articles/cs-1340/; https://doaj.org/toc/2376-5992

URL الوصول: https://doaj.org/article/c408f85e87f243fb834d1c7193eae5c5

المؤلفون: Wittchen, Manuel, Busche, Tobias, Gaspar, Andrew H, Lee, Ju Huck, Ton-That, Hung, Kalinowski, Jörn, Tauch, Andreas

المصدر: BMC Genomics. 19(1)

مصطلحات موضوعية: Human Genome, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Infection, Bacterial Proteins, Corynebacterium diphtheriae, DNA-Binding Proteins, Diphtheria, Diphtheria Toxin, Gene Expression Regulation, Bacterial, Genetic Variation, Genome, Bacterial, High-Throughput Nucleotide Sequencing, Humans, Iron, Operon, Promoter Regions, Genetic, Transcriptome, Transcriptome sequencing, RNA-Seq, Transcription start site, Promoter, DtxR, Diphtheria toxin, Biological Sciences, Information and Computing Sciences, Medical and Health Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4t14f30c
https://escholarship.org/content/qt4t14f30c/qt4t14f30c.pdf

المؤلفون: Salavati, Mazdak, Clark, Richard, Becker, Doreen, Kühn, Christa, Plastow, Graham, Dupont, Sébastien, Costa Monteiro Moreira, Gabriel, Charlier, Carole, Clark, Emily Louise

المصدر: G3: Genes, Genomes, Genetics (2023-05-22)

مصطلحات موضوعية: BovReg, CAGE-Seq, EuroFAANG, FAANG, Transcription start site, cattle genome, Life sciences, Genetics & genetic processes, Sciences du vivant, Génétique & processus génétiques

Relation: urn:issn:2160-1836

URL الوصول: https://orbi.uliege.be/handle/2268/305351