المؤلفون: Tristan Zindler, Helge Frieling, Alexandra Neyazi, Stefan Bleich, Eva Friedel

المصدر: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-15 (2020)

مصطلحات موضوعية: DNA methylation, Simulation, EPIC array, 450 K array, Illumina, Batch effects, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-020-03559-6; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/9bdd1df4c2cb4401acb3371ffad31123

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/journal_contribution/Clinical_and_demographic_characteristics_Full-term_Autism_cases_versus_control_subjects_/14981365

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.s001

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/journal_contribution/S3_Table_-/14981371

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.s003

المؤلفون: Mandaviya, P.R. (Pooja), Aïssi, D. (Dylan), Dekkers, K.F. (Koen F), Joehanes, R. (Roby), Kasela, S. (Silva), Truong, V. (Vinh), Stolk, L. (Lisette), Heemst, D.V. (Diana Van), Ikram, M.K. (Kamran), Lindemans, J. (Jan), Slagboom, P.E. (Eline), Tregouet, D.-A. (David-Alexandre), Uitterlinden, A.G. (André), Wei, C. (Chen), Wells, P. (Phil), Gagnon, F. (France), Greevenbroek, M.M. van, Heijmans, B.T. (Bastiaan T), Milani, L. (Lili), Morange, P.-E. (P.), Meurs, J.B.J. (Joyce) van, Heil, S.G. (Sandra)

المصدر: Epigenomics vol. 9 no. 11, pp. 1403-1422

مصطلحات موضوعية: 450 k array, association, DMP, DMR, DNA methylation, epigenome-wide analysis, homocysteine, meta-analysis

وصف الملف: application/pdf

Relation: http://repub.eur.nl/pub/102648; urn:hdl:1765/102648

الاتاحة: http://repub.eur.nl/pub/102648
https://doi.org/10.2217/epi-2017-0038

المؤلفون: Nordlund, Jessica, Backlin, Christofer L., Zachariadis, Vasilios, Cavelier, Lucia, Dahlberg, Johan, Ofverholm, Ingegerd, Barbany, Gisela, Nordgren, Ann, Overnas, Elin, Abrahamsson, Jonas, Flaegstad, Trond, Heyman, Mats M., Jonsson, Olafur G., Kanerva, Jukka, Larsson, Rolf, Palle, Josefine, Schmiegelow, Kjeld, Gustafsson, Mats G., Lonnerholm, Gudmar, Forestier, Erik, Syvanen, Ann-Christine

المساهمون: Children's Hospital, HUS Children and Adolescents

مصطلحات موضوعية: DNA methylation, Pediatric acute lymphoblastic leukemia, CpG site, Subtyping, Cytogenetics, RNA-seq, 450 k array, epigenetics, B-CELL PRECURSOR, GENE-EXPRESSION, COPY NUMBER, ARRAY, MUTATIONS, CLASSIFICATION, RESISTANCE, METHYLOME, NEOPLASMS, CARCINOMA, Cancers, Gynaecology and paediatrics

وصف الملف: application/pdf

Relation: This work was supported by grants from the Swedish Foundation for Strategic Research (RBc08-008; ACS, GL, MGG), the Eric, Karin, and Gosta Selanders Stiftelse (JN), the Swedish Cancer Society (CAN2010/592; ACS), the Swedish Childhood Cancer Foundation (11098; ACS), the Swedish Research Council for Science and Technology (90559401; ACS), and joint funding from the Swedish Research Councils FORTE, FORMAS, VINNOVA, and VR (259-2012-23; ACS) for epigenetics. Epigenotyping and RNA-sequencing were performed at the SNP&SEQ Technology Platform in Uppsala, Sweden. Computational analysis was performed using resources provided by SNIC through the Uppsala Multidisciplinary Center for Advanced Computational Science. We thank Anna-Karin Lannergard, Christina Leek, Lili Milani, and Anders Lundmark for technical assistance. We especially thank our colleagues from NOPHO and the ALL patients who contributed samples to this study. This study was approved by the NOPHO Scientific Committee as study number 56.; Nordlund , J , Backlin , C L , Zachariadis , V , Cavelier , L , Dahlberg , J , Ofverholm , I , Barbany , G , Nordgren , A , Overnas , E , Abrahamsson , J , Flaegstad , T , Heyman , M M , Jonsson , O G , Kanerva , J , Larsson , R , Palle , J , Schmiegelow , K , Gustafsson , M G , Lonnerholm , G , Forestier , E & Syvanen , A-C 2015 , ' DNA methylation-based subtype prediction for pediatric acute lymphoblastic leukemia ' , Clinical epigenetics , vol. 7 , 11 . https://doi.org/10.1186/s13148-014-0039-z; http://hdl.handle.net/10138/207010; 7650a714-55ff-428b-bca8-4b6fbe2506f0; 84927126704; 000350260800001

الاتاحة: http://hdl.handle.net/10138/207010

المؤلفون: Nordlund, Jessica, Backlin, Christofer L., Zachariadis, Vasilios, Cavelier, Lucia, Dahlberg, Johan, Ofverholm, Ingegerd, Barbany, Gisela, Nordgren, Ann, Overnas, Elin, Abrahamsson, Jonas, Flaegstad, Trond, Heyman, Mats M., Jonsson, Olafur G., Kanerva, Jukka, Larsson, Rolf, Palle, Josefine, Schmiegelow, Kjeld, Gustafsson, Mats G., Lonnerholm, Gudmar, Forestier, Erik, Syvanen, Ann-Christine

المصدر: Clinical Epigenetics. 7

مصطلحات موضوعية: DNA methylation, Pediatric acute lymphoblastic leukemia, CpG site, Subtyping, Cytogenetics, RNA- q, 450 k array, epigenetics

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-101397
https://doi.org/10.1186/s13148-014-0039-z
https://umu.diva-portal.org/smash/get/diva2:839547/FULLTEXT01.pdf

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/dataset/Details_of_all_significant_CpG_loci_in_autism_full-term_placenta_tissue_/14981368

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.s002

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/figure/Heat_map_showing_methylation_variation_in_autism_cases_compared_with_controls_/14981377

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.s005

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/figure/Schematic_summary_of_the_methylation_array_data_processing_and_analysis_pipeline_/14981380

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.g001

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/figure/Principal_Component_Analysis_PCA_showed_clear_separation_of_ASD_cases_and_normal_control_subjects_/14981374

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.s004

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/figure/Ingenuity_Pathway_Analysis_pathways_analysis_of_significant_DNA_methylation_variations_and_network_analysis_performed_using_Ingenuity_Pathway_Analysis_IPA_/14981383

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.g002

المؤلفون: Ray O. Bahado-Singh (804903), Sangeetha Vishweswaraiah (429990), Buket Aydas (8403159), Uppala Radhakrishna (804909)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Neuroscience, Physiology, Developmental Biology, Mental Health, Biological Sciences not elsewhere classified, autism detection, AUC, Illumina 450 K array, IPA, placental DNA methylation changes, FDR, ASD, differentially methylated loci, Ingenuity Pathway Analysis, full-term newborns Autism spectrum ., DL, 9655 CpGs differentially methylated, 10 control subjects, AI, brain development, CI

Relation: https://figshare.com/articles/dataset/Results_of_Term_Autism_Placenta_based_on_combined_Inter_and_intragenic_markers_with_FDR_p-value_0_05_/14981386

الاتاحة: https://doi.org/10.1371/journal.pone.0253340.t001

المؤلفون: Mandaviya, P.R., Aissi, D., Dekkers, K.F., Joehanes, R., Kasela, S., Truong, V., Stolk, L., Heemst, D. van, Ikram, M.A., Lindemans, J., Slagboom, P.E., Tregouet, D.A., Uitterlinden, A.G., Wei, C., Wells, P., Gagnon, F., Greevenbroek, M.M.J. van, Heijmans, B.T., Milani, L., Morange, P.E., Meurs, J.B.J. van, Heil, S.G., BIOS Consortium

المساهمون: Unité de Recherche sur les Maladies Cardiovasculaires, du Métabolisme et de la Nutrition = Research Unit on Cardiovascular and Metabolic Diseases (ICAN), Université Pierre et Marie Curie - Paris 6 (UPMC)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU), University of Toronto, Erasmus University Medical Center [Rotterdam] (Erasmus MC), Leiden University Medical Center (LUMC), Universiteit Leiden, Ottawa Hospital Research Institute, The Estonian Genome Center, University of Tartu, Fibrinolyse et Pathologie Vasculaire, Université de la Méditerranée - Aix-Marseille 2-Institut National de la Santé et de la Recherche Médicale (INSERM), Nutrition, obésité et risque thrombotique (NORT), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), ALESSI, Marie-Christine, Unité de Recherche sur les Maladies Cardiovasculaires, du Métabolisme et de la Nutrition = Institute of cardiometabolism and nutrition (ICAN), Université Pierre et Marie Curie - Paris 6 (UPMC)-Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [APHP], Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Interne Geneeskunde, RS: CARIM - R3.01 - Vascular complications of diabetes and the metabolic syndrome, Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), Clinical Chemistry, Internal Medicine, Epidemiology

المصدر: Epigenomics
Epigenomics, 2017, 9 (11), pp.1403-1422. ⟨10.2217/epi-2017-0038⟩
Epigenomics, Future Medicine, 2017, 9 (11), pp.1403-1422. ⟨10.2217/epi-2017-0038⟩
Epigenomics, 9(11), 1403-1422. Future Medicine Ltd.
Epigenomics, 9(11), 1403-1422

مصطلحات موضوعية: 0301 basic medicine, Male, Cancer Research, Homocysteine, SMOOTH-MUSCLE-CELLS, FOLIC-ACID, 030204 cardiovascular system & hematology, Epigenesis, Genetic, chemistry.chemical_compound, 0302 clinical medicine, Leukocytes, Large-Conductance Calcium-Activated Potassium Channel alpha Subunits, [SDV.MHEP.EM] Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism, DNA methylation, S-ADENOSYLHOMOCYSTEINE, VASCULAR-DISEASE, Tenascin, Methylation, RANDOMIZED CONTROLLED-TRIAL, [SDV.MHEP.EM]Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism, LIM Domain Proteins, Fatty Acid Transport Proteins, Basic-Leucine Zipper Transcription Factors, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Female, ESTROGEN-RECEPTOR-ALPHA, Biology, 03 medical and health sciences, 450 k array, Chromosome 19, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Genetics, Humans, Epigenetics, DMP, DMR, GENOME-WIDE, association, Chromosome, Epigenome, homocysteine, Molecular biology, LIM PROTEIN, Activating Transcription Factor 6, meta-analysis, 030104 developmental biology, chemistry, MYOCARDIAL-INFARCTION, PLASMA HOMOCYSTEINE, epigenome-wide analysis, DNA hypomethylation, Genome-Wide Association Study

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a1b19b6964c81bf912455d3f579cb82c
https://hdl.handle.net/1887/115574

المؤلفون: Ryan K. C. Yuen, John D. Blair, Peter von Dadelszen, Wendy P. Robinson, Deborah E. McFadden, Brendan K. Lim

المصدر: Molecular Human Reproduction

مصطلحات موضوعية: Embryology, pre-eclampsia, placenta, ADAM12 Protein, Biology, 03 medical and health sciences, 0302 clinical medicine, Pregnancy, Gene expression, Basic Helix-Loop-Helix Transcription Factors, Genetics, Humans, Epigenetics, Enhancer, Molecular Biology, Gene, Inhibin-beta Subunits, 030304 developmental biology, Homeodomain Proteins, Glucose Transporter Type 1, 0303 health sciences, DNA methylation, 030219 obstetrics & reproductive medicine, Membrane Proteins, Obstetrics and Gynecology, Articles, Cell Biology, Methylation, 3. Good health, ADAM Proteins, Reproductive Medicine, CpG site, CpG Islands, Female, 450 K array, Developmental Biology, DNA hypomethylation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74cb7bc388a1800ceeef328ecd55b1b1
https://doi.org/10.1093/molehr/gat044

المؤلفون: Gisela Barbany, Christofer Bäcklin, Ann Nordgren, Ann-Christine Syvänen, Olafur G. Jonsson, Mats Heyman, Vasilios Zachariadis, Lucia Cavelier, Ingegerd Ivanov Öfverholm, Elin Övernäs, Jukka Kanerva, Jonas Abrahamsson, Josefine Palle, Trond Flægstad, Johan Dahlberg, Erik Forestier, Mats G. Gustafsson, Gudmar Lönnerholm, Kjeld Schmiegelow, Jessica Nordlund, Rolf Larsson

المساهمون: Children's Hospital, HUS Children and Adolescents

المصدر: Clinical Epigenetics

مصطلحات موضوعية: RNA- q, Bioinformatics, Subtyping, 0302 clinical medicine, 3123 Gynaecology and paediatrics, Genetics (clinical), GENE-EXPRESSION, 0303 health sciences, DNA methylation, Hematology, Methylation, CpG site, 3. Good health, Real-time polymerase chain reaction, 030220 oncology & carcinogenesis, Chromosome abnormality, NEOPLASMS, CARCINOMA, education, 3122 Cancers, Copy number analysis, Biology, CLASSIFICATION, 03 medical and health sciences, Cytogenetics, 450 k array, METHYLOME, Acute lymphocytic leukemia, Genetics, medicine, Hematologi, Epigenetics, Molecular Biology, 030304 developmental biology, Cancer och onkologi, epigenetics, MUTATIONS, Research, B-CELL PRECURSOR, medicine.disease, COPY NUMBER, Cancer and Oncology, Cancer research, ARRAY, Pediatric acute lymphoblastic leukemia, RNA-seq, RESISTANCE, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa6724ccd49240f1ff8a7fd7a672c600
http://hdl.handle.net/10138/207010